CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os09g0107400

Gene name
Homology with Arabidopsis Similar to At3g03460: unknown protein (HF=2e+0)

Module size 17 genes

NF 0.54

%ile 71.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 89.6 0.98 Os09g0107400 9637.m00042 - - 2e+0 At3g03460 unknown protein O.I. H.G. S.X.
0.72 89.8 0.99 Os03g0403900 9631.m02829 - - 7e-1 At2g01300 unknown protein O.I. H.G. S.X.
0.70 88.4 0.99 Os11g0172900 9639.m00656 - - 1e-1 At4g21230 protein kinase family protein O.I. H.G. S.X.
0.65 83.8 0.99 Os01g0626601 9629.m04206 - - 8e-2 At3g44140 unknown protein O.I. H.G. S.X.
0.56 76.3 0.98 Os02g0196200 9630.m00943 - - 5e-1 At4g25490 CBF1 (C-REPEAT/DRE BINDING FACTOR 1) O.I. H.G. S.X.
0.54 71.9 0.99 Os02g0451400 9630.m02380 - - 5e-2 At3g46380 unknown protein O.I. H.G. S.X.
0.51 68.7 0.98 Os05g0293500 AK072592.1 - Probable pectate lyase 18 precursor (EC 4.2.2.2)(Pectate lyase A10) 3e-3 At4g24780 pectate lyase family protein O.I. H.G. S.X.
0.51 68.7 0.99 Os06g0542800 9634.m03318 - - 8e-3 At4g34560 unknown protein O.I. H.G. S.X.
0.51 68.7 0.98 Os03g0406300 9631.m02853 - - 1e-1 At1g72490 unknown protein O.I. H.G. S.X.
0.50 68.0 0.99 Os07g0144800 9635.m00451 - - 1e+0 At1g75950 SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) O.I. H.G. S.X.
0.49 64.4 0.99 Os05g0290200 9633.m01960 - - 3e-1 At5g19800 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.47 62.3 0.99 Os06g0180600 9634.m00760 - - 2e+0 At1g65770 F-box family protein O.I. H.G. S.X.
0.44 58.1 0.99 Os03g0354700 9631.m02326 - - 6e+0 At3g60966 protein binding / zinc ion binding O.I. H.G. S.X.
0.43 55.4 0.99 Os03g0136966 9631.m00355 - - 4e+0 At5g43175 basic helix-loop-helix (bHLH) family protein O.I. H.G. S.X.
0.42 53.9 0.99 Os08g0206500 9636.m01016 - Transcription factor CBF/NF-Y/archaeal histonedomain containing protein 5e-2 At1g54830 NF-YC3 (NUCLEAR FACTOR Y, SUBUNIT C3) O.I. H.G. S.X.
0.42 53.9 0.99 Os01g0658801 9629.m04500 - - 6e+0 At5g28050 cytidine/deoxycytidylate deaminase family protein O.I. H.G. S.X.
0.36 44.0 0.99 Os04g0280600 9632.m01942 - - 8e-7 At5g14180 MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.71	89.6	0.98	Os09g0107400	9637.m00042	-	-	2e+0	At3g03460	unknown protein	O.I.	H.G.	S.X.
0.72	89.8	0.99	Os03g0403900	9631.m02829	-	-	7e-1	At2g01300	unknown protein	O.I.	H.G.	S.X.
0.70	88.4	0.99	Os11g0172900	9639.m00656	-	-	1e-1	At4g21230	protein kinase family protein	O.I.	H.G.	S.X.
0.65	83.8	0.99	Os01g0626601	9629.m04206	-	-	8e-2	At3g44140	unknown protein	O.I.	H.G.	S.X.
0.56	76.3	0.98	Os02g0196200	9630.m00943	-	-	5e-1	At4g25490	CBF1 (C-REPEAT/DRE BINDING FACTOR 1)	O.I.	H.G.	S.X.
0.54	71.9	0.99	Os02g0451400	9630.m02380	-	-	5e-2	At3g46380	unknown protein	O.I.	H.G.	S.X.
0.51	68.7	0.98	Os05g0293500	AK072592.1	-	Probable pectate lyase 18 precursor (EC 4.2.2.2)(Pectate lyase A10)	3e-3	At4g24780	pectate lyase family protein	O.I.	H.G.	S.X.
0.51	68.7	0.99	Os06g0542800	9634.m03318	-	-	8e-3	At4g34560	unknown protein	O.I.	H.G.	S.X.
0.51	68.7	0.98	Os03g0406300	9631.m02853	-	-	1e-1	At1g72490	unknown protein	O.I.	H.G.	S.X.
0.50	68.0	0.99	Os07g0144800	9635.m00451	-	-	1e+0	At1g75950	SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1)	O.I.	H.G.	S.X.
0.49	64.4	0.99	Os05g0290200	9633.m01960	-	-	3e-1	At5g19800	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.
0.47	62.3	0.99	Os06g0180600	9634.m00760	-	-	2e+0	At1g65770	F-box family protein	O.I.	H.G.	S.X.
0.44	58.1	0.99	Os03g0354700	9631.m02326	-	-	6e+0	At3g60966	protein binding / zinc ion binding	O.I.	H.G.	S.X.
0.43	55.4	0.99	Os03g0136966	9631.m00355	-	-	4e+0	At5g43175	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.
0.42	53.9	0.99	Os08g0206500	9636.m01016	-	Transcription factor CBF/NF-Y/archaeal histonedomain containing protein	5e-2	At1g54830	NF-YC3 (NUCLEAR FACTOR Y, SUBUNIT C3)	O.I.	H.G.	S.X.
0.42	53.9	0.99	Os01g0658801	9629.m04500	-	-	6e+0	At5g28050	cytidine/deoxycytidylate deaminase family protein	O.I.	H.G.	S.X.
0.36	44.0	0.99	Os04g0280600	9632.m01942	-	-	8e-7	At5g14180	MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
25.7 99.5 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
21.9 99.3 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.5 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3 98.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.2 98.4 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1 98.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7 98.4 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6 98.4 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3 98.3 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
25.7	99.5	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
21.9	99.3	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
13.5	98.5	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3	98.4	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.2	98.4	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1	98.4	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7	98.4	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6	98.4	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4	98.3	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3	98.3	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os09g0107400
Gene name
Homology with Arabidopsis	Similar to At3g03460: unknown protein (HF=2e+0)
Module size	17 genes
NF	0.54
%ile	71.9

Co-expression analysis

Gene ID Os09g0107400 Gene name Homology with ArabidopsisSimilar to At3g03460: unknown protein (HF=2e+0) Module size 17 genes NF 0.54 %ile 71.9

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os09g0107400

Gene name
Homology with Arabidopsis Similar to At3g03460: unknown protein (HF=2e+0)

Module size 17 genes

NF 0.54

%ile 71.9

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays