CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os08g0554400

Gene name
Homology with Arabidopsis Similar to At1g14580: zinc finger (C2H2 type) family protein (HF=4e-25)

Module size 6 genes

NF 0.12

%ile 9.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.91 Os08g0554400 AK101181.1 - Zn-finger, C2H2 type domain containing protein 4e-25 At1g14580 zinc finger (C2H2 type) family protein O.I. H.G. S.X.
0.67 87.2 0.92 Os06g0702400 AK120529.1 - Hypothetical protein 5e-2 At3g42310 unknown protein O.I. H.G. S.X.
0.61 81.2 0.91 Os05g0147100 AK109133.1 - Conserved hypothetical protein 1e-2 At4g00180 YAB3 (YABBY3) O.I. H.G. S.X.
0.60 79.7 0.92 Os04g0443200 AK107991.1 - Protein of unknown function DUF538 family protein 1e+0 At3g04630 WDL1 O.I. H.G. S.X.
0.06 3.0 0.91 Os04g0278900 AK108886.1 - Dihydrouridine synthase, DuS family protein 2e-3 At3g63510 FAD binding / catalytic/ tRNA dihydrouridine synthase O.I. H.G. S.X.
0.03 1.4 0.92 Os05g0510300 AK120186.1 - Peptidase C19, ubiquitin carboxyl-terminalhydrolase 2 family protein 1e-3 At3g14400 UBP25 (UBIQUITIN-SPECIFIC PROTEASE 25) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
22.0 99.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.0 98.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.3 98.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.2 98.8 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.8 98.7 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.5 98.7 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2 98.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2 98.5 GSM195218 stigma 1, biological rep1 GSE7951 Genome-wide gene expression profiling of rice stigma
14.2 98.5 GSM195220 stigma 3, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
14.1 98.5 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.077 1 GO:0007018 Movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins.
0.038 1 GO:0006511 The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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