CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os08g0547800

Gene name
Homology with Arabidopsis Similar to At5g66770: scarecrow transcription factor family protein (HF=1e+1)

Module size 9 genes

NF 0.14

%ile 12.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 81.2 0.85 Os08g0547800 AK106054.1 - Esterase/lipase/thioesterase domain containingprotein 1e+1 At5g66770 scarecrow transcription factor family protein O.I. H.G. S.X.
0.32 36.3 0.90 Os06g0537600 AK063014.1 - Zn-finger, RING domain containing protein 9e-2 At5g11930 glutaredoxin family protein O.I. H.G. S.X.
0.23 21.2 0.87 Os05g0435800 AK067138.1 - Subtilisin-like protease 8e-2 At3g14067 subtilase family protein O.I. H.G. S.X.
0.19 15.1 0.85 Os08g0108300 AK063596.1 - Pistil-specific extensin-like protein familyprotein 6e-1 At4g05430 - O.I. H.G. S.X.
0.17 12.6 0.89 Os08g0556400 AK106793.1 - Zn-finger, DHHC type domain containing protein 2e-1 At3g24710 - O.I. H.G. S.X.
0.11 6.5 0.86 Os01g0195400 CF301352 - Harpin-induced 1 domain containing protein 6e-2 At5g18540 unknown protein O.I. H.G. S.X.
0.11 6.5 0.87 Os02g0753400 9630.m05087 - Conserved hypothetical protein 5e-1 At4g11300 unknown protein O.I. H.G. S.X.
0.10 5.7 0.87 Os05g0272800 AK068945.1 - Conserved hypothetical protein 2e-4 At2g47010 unknown protein O.I. H.G. S.X.
0.08 4.2 0.85 Os06g0247900 AK065325.1 - Endo-beta-1,4-glucanase precursor (EC 3.2.1.4) 1e-5 At1g64390 AtGH9C2 (Arabidopsis thaliana glycosyl hydrolase 9C2) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
37.6 99.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
19.9 99.1 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.6 98.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5 97.5 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3 97.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.0 97.4 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.5 97.2 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.4 97.2 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.1 97.1 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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