CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os08g0543100

Gene name
Homology with Arabidopsis Similar to At2g07340: prefoldin-related KE2 family protein (HF=1e-1)

Module size 6 genes

NF 0.59

%ile 80.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 94.6 0.89 Os08g0543100 9636.m04377 - Disease resistance protein family protein 1e-1 At2g07340 prefoldin-related KE2 family protein O.I. H.G. S.X.
0.55 73.7 0.89 Os07g0610400 9635.m04199 - - 6e+0 At4g25890 60S acidic ribosomal protein P3 (RPP3A) O.I. H.G. S.X.
0.55 73.7 0.91 Os12g0129000 9640.m00264 - Eukaryotic protein of unknown function DUF872family protein 3e-1 At5g65350 histone H3 O.I. H.G. S.X.
0.50 68.0 0.86 Os02g0282500 9630.m01709 - NBS-LRR protein (Fragment) 3e-1 At1g32990 PRPL11 (PLASTID RIBOSOMAL PROTEIN L11) O.I. H.G. S.X.
0.50 68.0 0.88 Os02g0704800 BM420590 - Ornithine carbamoyltransferase OOCT1 (EC 2.1.3.3) 2e+0 At1g52680 late embryogenesis abundant protein-related / LEA protein-related O.I. H.G. S.X.
0.40 51.1 0.88 Os09g0436300 AK103151.1 - Peptidase, trypsin-like serine and cysteineproteases domain containing protein 8e-1 At5g22610 F-box family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
38.4 99.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
21.5 99.2 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.5 98.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.5 98.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6 98.4 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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