CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os08g0517200

Gene name
Homology with Arabidopsis Similar to At4g29900: ACA10 (AUTOINHIBITED CA(2+)-ATPASE 10) (HF=1e-39)

Module size 7 genes

NF 0.23

%ile 22.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 82.7 0.93 Os08g0517200 AK058787.1 - Potential calcium-transporting ATPase 9, plasmamembrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 9) 1e-39 At4g29900 ACA10 (AUTOINHIBITED CA(2+)-ATPASE 10) O.I. H.G. S.X.
0.30 32.7 0.93 Os10g0524400 AK108768.1 - Phospholipase D (EC 3.1.4.4) 2e-19 At4g11840 PLDGAMMA3 O.I. H.G. S.X.
0.25 24.1 0.93 Os02g0721800 AK100043.1 - Phosphatidylinositol transfer-like protein IV 2e-9 At1g75370 SEC14 cytosolic factor, putative / phosphatidylinositol transfer-like protein, putative O.I. H.G. S.X.
0.21 17.9 0.93 Os07g0409900 AF194414.2 - Protein kinase domain containing protein 6e-33 At2g17890 CPK16 O.I. H.G. S.X.
0.19 15.1 0.92 Os06g0229200 AK070606.1 - Glycosyl transferase, family 31 protein 7e-9 At1g26810 GALT1 (GALACTOSYLTRANSFERASE1) O.I. H.G. S.X.
0.17 12.6 0.92 Os07g0511000 AK070461.1 - Conserved hypothetical protein 2e-2 At5g55060 unknown protein O.I. H.G. S.X.
0.13 8.2 0.92 Os02g0545000 AK062923.1 - Dilute domain containing protein 1e+0 At1g21900 emp24/gp25L/p24 family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
25.1 99.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.5 99.0 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.9 98.8 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.3 98.7 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.1 98.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.0 98.6 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.6 98.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1 98.4 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0 98.4 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8 98.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.154 1 GO:0046470 The chemical reactions and pathways involving phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline. They are important constituents of cell membranes.
0.069 1 GO:0006486 The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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