CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os08g0515000

Gene name
Homology with Arabidopsis Similar to At3g45080: sulfotransferase family protein (HF=2e-3)

Module size 8 genes

NF 0.06

%ile 4.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 81.2 0.95 Os08g0515000 9636.m04085 - Sulfotransferase family protein 2e-3 At3g45080 sulfotransferase family protein O.I. H.G. S.X.
0.20 16.5 0.96 Os02g0458100 AK070116.1 - Sesquiterpene cyclase 1 1e+0 At5g41650 lactoylglutathione lyase family protein / glyoxalase I family protein O.I. H.G. S.X.
0.13 8.2 0.96 Os05g0479800 AK121345.1 - Disease resistance protein family protein 2e+0 At1g71520 AP2 domain-containing transcription factor, putative O.I. H.G. S.X.
0.06 3.0 0.96 Os03g0556600 AK066162.1 - - 2e-9 At4g21380 ARK3 (A. THALIANA RECEPTOR KINASE 3) O.I. H.G. S.X.
0.04 2.0 0.95 Os06g0145200 AK109544.1 - - 5e-3 At1g67840 CSK (CHLOROPLAST SENSOR KINASE) O.I. H.G. S.X.
0.04 2.0 0.96 Os05g0535600 9633.m04304 - Inositol polyphosphate related phosphatase familyprotein 6e-11 At1g34120 IP5PI (INOSITOL POLYPHOSPHATE 5-PHOSPHATASE I) O.I. H.G. S.X.
0.03 1.4 0.95 Os05g0525600 9633.m04204 - Protein kinase domain containing protein 2e-2 At1g51870 protein kinase family protein O.I. H.G. S.X.
0.03 1.4 0.95 Os04g0506700 9632.m04086 - - 8e-2 At2g18530 protein kinase family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
62.1 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
39.0 99.9 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
16.8 98.8 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.1 98.7 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.8 98.7 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.3 98.7 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.1 98.6 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.3 98.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.015 1 GO:0006952 Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
0.012 1 GO:0006915 A form of programmed cell death that begins when a cell receives internal or external signals that trigger the activity of proteolytic caspases, proceeds through a series of characteristic stages typically including rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), and plasma membrane blebbing (but maintenance of its integrity until the final stages of the process), and ends with the death of the cell.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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