Co-expression analysis

Gene ID	Os08g0510800
Gene name
Homology with Arabidopsis	Similar to At4g17500: ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1) (HF=3e+0)
Module size	6 genes
NF	0.23
%ile	21.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	76.3	0.93	Os08g0510800	AK072063.1	-	Conserved hypothetical protein	3e+0	At4g17500	ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.35	41.7	0.93	Os03g0101300	AK069891.1	-	-	8e-2	At1g50310	STP9 (SUGAR TRANSPORTER 9)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.33	38.8	0.93	Os05g0511700	9633.m04055	-	Putative rRNA methylase family protein	8e-5	At5g08415	lipoic acid synthase family protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.28	31.1	0.93	Os12g0290200	AK112053.1	-	-	1e-14	At5g50210	QS (QUINOLINATE SYNTHASE)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.13	8.2	0.94	Os03g0822800	AK099592.1	-	Chaperone protein dnaJ	3e-3	At5g59610	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.11	6.5	0.93	Os04g0349600	AK070947.1	-	TPR-like domain containing protein	2e-2	At3g19160	ATIPT8 (ATP/ADP ISOPENTENYLTRANSFERASES)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.6	98.1	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4	98.1	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3	98.1	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3	97.9	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2	97.9	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1	97.9	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1	97.9	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.2	97.7	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.2	97.7	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.1	97.7	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO

Inter-species module comparison

A co-expression module including the wheat gene, Ta.21703.1.A1_at, orthologous to the query gene, Os08g0510800

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.3	Ta.21703.1.A1_at	At4g17500	-	-	5e-1	At1g17530	ATTIM23-1 (TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 23)	O.I.	H.G.	S.X.	Please select
0.67	86.3	Ta.10534.1.S1_a_at	At4g17500	-	-	4e-1	At4g11485	LCR11 (Low-molecular-weight cysteine-rich 11)	O.I.	H.G.	S.X.	Please select
0.56	78.6	Ta.28828.1.S1_s_at	At4g17500	-	-	1e-5	At3g06350	MEE32 (MATERNAL EFFECT EMBRYO ARREST 32)	O.I.	H.G.	S.X.	Please select
0.38	54.7	TaAffx.92508.1.S1_at	At4g17500	-	-	3e-5	At5g19460	atnudt20 (Arabidopsis thaliana Nudix hydrolase homolog 20)	O.I.	H.G.	S.X.	Please select
0.33	46.9	Ta.4372.1.A1_at	At4g17500	-	-	7e+0	At5g05100	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.32	44.4	Ta.1705.3.S1_a_at	At4g17500	-	-	4e-3	At3g48870	HSP93-III	O.I.	H.G.	S.X.	Please select
0.19	22.4	Ta.9380.1.S1_x_at	At4g17500	-	-	3e-4	At4g38220	aminoacylase, putative / N-acyl-L-amino-acid amidohydrolase, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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