CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os08g0503700

Gene name
Homology with Arabidopsis Similar to At5g47560: TDT (TONOPLAST DICARBOXYLATE TRANSPORTER) (HF=1e-9)

Module size 7 genes

NF 0.10

%ile 7.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.84 Os08g0503700 AK072183.1 - - 1e-9 At5g47560 TDT (TONOPLAST DICARBOXYLATE TRANSPORTER) O.I. H.G. S.X.
0.40 51.1 0.86 Os11g0444800 AK061328.1 - Hypothetical protein 6e-7 At3g48240 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein O.I. H.G. S.X.
0.16 11.3 0.89 Os05g0110800 AK067749.1 - Conserved hypothetical protein 2e-3 At5g59400 unknown protein O.I. H.G. S.X.
0.08 4.2 0.87 Os09g0464000 AK060777.1 - Carbonic anhydrase, prokaryotic and plant domaincontaining protein 2e-1 At1g24822 unknown protein O.I. H.G. S.X.
0.07 3.7 0.85 Os09g0478100 AK103810.1 - Cellulose synthase family protein 7e-2 At1g55850 ATCSLE1 O.I. H.G. S.X.
0.06 3.0 0.83 Os11g0118300 AK064985.1 - NPH3 domain containing protein 7e-2 At5g42750 BKI1 (BRI1 kinase inhibitor 1) O.I. H.G. S.X.
0.06 3.0 0.83 Os02g0818000 AK065134.1 - - 4e+0 At4g20970 basic helix-loop-helix (bHLH) family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
34.9 99.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
26.0 99.5 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.2 98.8 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.0 98.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.2 98.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.9 98.6 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.6 98.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.6 98.6 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.6 98.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7 98.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.133 1 GO:0015976
0.111 1 GO:0006814 The directed movement of sodium ions (Na+) into, out of, within or between cells.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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