CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os08g0495800

Gene name
Homology with Arabidopsis Similar to At1g55740: AtSIP1 (Arabidopsis thaliana seed imbibition 1) (HF=3e-26)

Module size 6 genes

NF 0.11

%ile 8.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 93.1 0.81 Os08g0495800 AK067229.1 - Raffinose synthase family protein 3e-26 At1g55740 AtSIP1 (Arabidopsis thaliana seed imbibition 1) O.I. H.G. S.X.
0.44 58.1 0.82 Os11g0152900 AK109321.1 - Hypothetical protein 1e-1 At1g71100 RSW10 (RADIAL SWELLING 10) O.I. H.G. S.X.
0.29 31.1 0.83 Os08g0357300 AK100580.1 - Basic-leucine zipper (bZIP) transcription factordomain containing protein 8e-8 At1g75388 CPuORF5 (Conserved peptide upstream open reading frame 5) O.I. H.G. S.X.
0.11 6.5 0.82 Os12g0611100 AK066826.1 - SRKb 2e-5 At1g16670 protein kinase family protein O.I. H.G. S.X.
0.10 5.7 0.83 Os04g0687900 AK062547.1 - Tubby family protein 1e-6 At1g25280 AtTLP10 (TUBBY LIKE PROTEIN 10) O.I. H.G. S.X.
0.05 2.5 0.79 Os06g0168500 AK100316.1 - Syntaxin-like protein (Fragment) 3e-6 At3g03800 SYP131 (SYNTAXIN OF PLANTS 131) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.7 98.2 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
9.2 97.9 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.2 97.7 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6 97.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.4 97.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.8 97.3 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.6 97.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.4 97.2 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.2 97.1 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.2 97.1 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.020 1 GO:0006886 The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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