CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os08g0479300

Gene name
Homology with Arabidopsis Similar to At1g66940: protein kinase-related (HF=9e-1)

Module size 11 genes

NF 0.59

%ile 80.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.59 78.0 0.94 Os08g0479300 AK070025.1 - Cyclin, N-terminal domain containing protein 9e-1 At1g66940 protein kinase-related O.I. H.G. S.X.
0.84 96.0 0.97 Os03g0114000 AK063381.1 - Kinesin-related protein (Fragment) 7e-48 At2g22610 kinesin motor protein-related O.I. H.G. S.X.
0.70 88.4 0.96 Os05g0459400 AK073413.1 - Kinesin, motor region domain containing protein 4e+0 At5g37415 sequence-specific DNA binding / transcription factor O.I. H.G. S.X.
0.67 87.2 0.96 Os06g0256100 AK119768.1 - Hypothetical protein 3e+0 At5g04600 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.64 83.4 0.96 Os05g0409400 AK102597.1 - MAP65/ASE1 family protein 7e-5 At2g38720 MAP65-5 (MICROTUBULE-ASSOCIATED PROTEIN 65-5) O.I. H.G. S.X.
0.56 76.3 0.95 Os08g0129600 AK102166.1 - Conserved hypothetical protein 6e-3 At4g18570 proline-rich family protein O.I. H.G. S.X.
0.56 76.3 0.96 Os05g0497100 AK064293.1 - Chromosome condensation protein 7e-62 At5g48600 ATSMC3 (ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 3) O.I. H.G. S.X.
0.56 76.3 0.96 Os10g0104900 AK112062.1 - Chromomethylase 3 1e-5 At1g69770 CMT3 (chromomethylase 3) O.I. H.G. S.X.
0.48 63.7 0.96 Os03g0302900 AK069222.1 - Hypothetical protein 2e+0 At5g59750 riboflavin biosynthesis protein, putative O.I. H.G. S.X.
0.46 60.9 0.97 Os07g0659500 BX898151 - Non-SMC condensin subunit, XCAP-D2/Cnd1 familyprotein 7e-25 At3g57060 binding O.I. H.G. S.X.
0.37 45.0 0.95 Os01g0108800 AK102103.1 - Plant protein of unknown function DUF936 familyprotein 1e+0 At4g23670 major latex protein-related / MLP-related O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
41.9 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
23.7 99.4 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.4 98.7 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
8.2 97.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.9 97.3 GSM159184 Y Leaf, biological rep 2 GSE6893 Expression data for reproductive development in rice
6.2 97.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.1 97.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.7 96.9 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.6 96.9 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.6 96.9 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.056 1 GO:0006306 The covalent transfer of a methyl group to either N-6 of adenine or C-5 or N-4 of cytosine.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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