CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os08g0466200

Gene name
Homology with Arabidopsis Similar to At4g13420: HAK5 (HIGH AFFINITY K+ TRANSPORTER 5) (HF=8e-2)

Module size 7 genes

NF 0.21

%ile 18.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.55 73.7 0.83 Os08g0466200 AK119564.1 - K+ potassium transporter family protein 8e-2 At4g13420 HAK5 (HIGH AFFINITY K+ TRANSPORTER 5) O.I. H.G. S.X.
0.33 38.8 0.85 Os11g0708100 AK060544.1 - Laccase (EC 1.10.3.2) (Fragment) 1e-8 At5g01190 LAC10 (laccase 10) O.I. H.G. S.X.
0.25 24.1 0.87 Os10g0165300 NM_195010.1 - Cytochrome P450 family protein 1e-2 At2g45580 CYP76C3 O.I. H.G. S.X.
0.17 12.6 0.88 Os08g0425700 AK059408.1 - Annexin-like protein 4e-2 At1g09176 unknown protein O.I. H.G. S.X.
0.15 10.3 0.86 Os01g0620800 AK108846.1 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 6e-5 At3g21760 UDP-glucoronosyl/UDP-glucosyl transferase family protein O.I. H.G. S.X.
0.15 10.3 0.88 Os08g0203700 AK100532.1 - Protein kinase domain containing protein 2e-3 At1g56120 kinase O.I. H.G. S.X.
0.11 6.5 0.85 Os02g0529800 9630.m03109 - Cytochrome P450 family protein 3e-3 At2g24180 CYP71B6 (CYTOCHROME P450 71B6) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.4 99.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.2 98.8 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.6 98.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.8 98.7 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.7 98.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.7 98.6 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.7 98.6 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.3 98.6 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.1 98.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.8 98.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage