CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os08g0450200

Gene name
Homology with Arabidopsis Similar to At1g11580: PMEPCRA (METHYLESTERASE PCR A) (HF=7e-2)

Module size 6 genes

NF 0.57

%ile 77.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.99 Os08g0450200 AK072779.1 - Pectinmethylesterase precursor (EC 3.1.1.11)(Fragment) 7e-2 At1g11580 PMEPCRA (METHYLESTERASE PCR A) O.I. H.G. S.X.
0.67 87.2 0.99 Os05g0149100 AK107944.1 - C2 domain containing protein 9e-1 At4g09680 unknown protein O.I. H.G. S.X.
0.61 81.2 0.99 Os03g0838500 AK121130.1 - Proteinase inhibitor I9, subtilisin propeptidedomain containing protein 1e+0 At5g09540 DNAJ heat shock N-terminal domain-containing protein O.I. H.G. S.X.
0.53 71.3 0.99 Os02g0187400 AK068914.1 - Glycerophosphoryl diester phosphodiesterase familyprotein 2e-2 At5g55480 SVL1 (SHV3-LIKE 1) O.I. H.G. S.X.
0.44 58.1 0.99 Os11g0512800 AK064740.1 - Hypothetical protein 6e+0 At5g28020 CYSD2 (CYSTEINE SYNTHASE D2) O.I. H.G. S.X.
0.39 48.3 0.99 Os08g0561900 AK070505.1 - Alpha-expansin OsEXPA26 2e-3 At2g39700 ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
24.9 99.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.5 98.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.1 98.8 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.1 98.4 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0 98.4 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.125 1 GO:0006071 The chemical reactions and pathways involving glycerol, 1,2,3-propanetriol, a sweet, hygroscopic, viscous liquid, widely distributed in nature as a constituent of many lipids.
0.080 1 GO:0042545 The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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