CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os08g0440000

Gene name
Homology with Arabidopsis Similar to At1g15880: GOS11 (golgi snare 11) (HF=2e-3)

Module size 6 genes

NF 0.33

%ile 36.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 89.6 0.96 Os08g0440000 AK102539.1 - Vesicle transport v-SNARE family protein 2e-3 At1g15880 GOS11 (golgi snare 11) O.I. H.G. S.X.
0.60 79.7 0.96 Os02g0293400 AK072985.1 - Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven inabsentia homolog 5). Splice isoform 2 6e-45 At3g61790 seven in absentia (SINA) family protein O.I. H.G. S.X.
0.46 60.9 0.97 Os05g0357800 AK060514.1 - Phospholipid/glycerol acyltransferase familyprotein 2e-4 At1g80950 phospholipid/glycerol acyltransferase family protein O.I. H.G. S.X.
0.27 27.5 0.97 Os04g0568900 AK070267.1 - RES protein 2e-7 At1g12760 protein binding / ubiquitin-protein ligase/ zinc ion binding O.I. H.G. S.X.
0.19 15.1 0.96 Os06g0665000 AK104873.1 - Eukaryotic protein of unknown function DUF284family protein 4e-6 At1g79450 ALIS5 (ALA-Interacting Subunit 5) O.I. H.G. S.X.
0.13 8.2 0.96 Os08g0282000 AK101411.1 - CD9/CD37/CD63 antigen family protein 3e-3 At1g32400 TOM2A (TOBAMOVIRUS MULTIPLICATION 2A) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
23.9 99.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.5 99.3 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.2 99.0 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.0 98.9 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.0 98.9 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.5 98.9 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.3 98.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.2 98.8 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.1 98.8 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.7 98.8 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.095 1 GO:0007275 The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
0.038 1 GO:0006511 The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein.
0.020 1 GO:0006886 The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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