CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os08g0432000

Gene name
Homology with Arabidopsis Similar to At2g46780: RNA binding / nucleic acid binding / nucleotide binding (HF=2e+0)

Module size 15 genes

NF 0.31

%ile 33.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 81.2 0.86 Os08g0432000 AK066449.1 - Hypothetical protein 2e+0 At2g46780 RNA binding / nucleic acid binding / nucleotide binding O.I. H.G. S.X.
0.55 73.7 0.91 Os05g0543800 AK102850.1 - Hypothetical protein 4e+0 Atmg00720 - O.I. H.G. S.X.
0.50 68.0 0.88 Os04g0243400 AK070633.1 - Conserved hypothetical protein 4e+0 At5g26890 unknown protein O.I. H.G. S.X.
0.43 55.4 0.92 Os01g0933400 AK070303.1 - Hypothetical protein 7e-1 At1g21600 PTAC6 (PLASTID TRANSCRIPTIONALLY ACTIVE6) O.I. H.G. S.X.
0.43 55.4 0.89 Os10g0357700 AK106693.1 - Conserved hypothetical protein 9e-1 At4g39890 AtRABH1c (Arabidopsis Rab GTPase homolog H1c) O.I. H.G. S.X.
0.41 52.4 0.90 Os11g0579600 AK106009.1 - Conserved hypothetical protein 2e-1 At1g76070 unknown protein O.I. H.G. S.X.
0.41 52.4 0.89 Os11g0689800 AK119600.1 - Conserved hypothetical protein 9e-1 At5g05420 immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative O.I. H.G. S.X.
0.36 44.0 0.88 Os10g0388500 AK120894.1 - - 4e+0 At5g37200 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.36 44.0 0.91 Os08g0355500 AK106035.1 - Conserved hypothetical protein 5e-1 At5g23840 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein O.I. H.G. S.X.
0.34 40.0 0.90 Os12g0179700 AK120612.1 - Hypothetical protein 1e+0 At2g01464 - O.I. H.G. S.X.
0.31 34.5 0.89 Os07g0228600 AK067554.1 - - 2e+0 At3g51510 unknown protein O.I. H.G. S.X.
0.31 34.5 0.90 Os04g0227100 AK120507.1 - - 6e-1 At3g47580 leucine-rich repeat transmembrane protein kinase, putative O.I. H.G. S.X.
0.29 31.1 0.89 Os02g0599700 AK065211.1 - Protein phosphatase 2C-like domain containingprotein 7e-3 At2g25070 protein phosphatase 2C, putative / PP2C, putative O.I. H.G. S.X.
0.17 12.6 0.88 Os04g0350000 AK063387.1 - TPR-like domain containing protein 3e-2 At1g62680 - O.I. H.G. S.X.
0.09 4.9 0.89 Os06g0218200 AK120566.1 - SWIM Zn-finger domain containing protein 5e+0 At4g17245 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
31.9 99.7 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.6 99.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.3 98.4 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.1 98.4 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.5 98.3 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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