CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os08g0431900

Gene name
Homology with Arabidopsis Similar to At3g57230: AGL16 (AGAMOUS-LIKE 16) (HF=6e-6)

Module size 9 genes

NF 0.46

%ile 60.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 71.3 0.99 Os08g0431900 AY345220.1 - Transcription factor MADS23 6e-6 At3g57230 AGL16 (AGAMOUS-LIKE 16) O.I. H.G. S.X.
0.53 71.3 0.99 Os06g0266000 AK105495.1 - Conserved hypothetical protein 1e+0 At4g24590 unknown protein O.I. H.G. S.X.
0.46 60.9 0.99 Os07g0620000 NM_189851.1 - - 2e+0 At4g06599 ubiquitin family protein O.I. H.G. S.X.
0.45 58.8 0.99 Os02g0799200 9630.m05523 - - 1e-1 At5g22545 unknown protein O.I. H.G. S.X.
0.44 58.1 0.99 Os11g0672600 AK119365.1 - RNA-directed DNA polymerase (Reversetranscriptase) domain containing protein 6e-3 At1g70830 MLP28 (MLP-LIKE PROTEIN 28) O.I. H.G. S.X.
0.44 58.1 0.99 Os04g0226700 9632.m01388 - - 1e+0 At5g13510 ribosomal protein L10 family protein O.I. H.G. S.X.
0.43 55.4 0.99 Os07g0410600 NM_187805.1 - - 1e+0 At2g46400 WRKY46 O.I. H.G. S.X.
0.41 52.4 0.99 Os07g0585400 NM_187008.1 - - 8e+0 At5g42655 - O.I. H.G. S.X.
0.40 51.1 0.99 Os12g0205600 9638.m00882 - - 3e+0 At5g37770 TCH2 (TOUCH 2) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.3 99.1 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
14.9 98.6 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.3 98.6 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2 98.5 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.0 98.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.7 98.5 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.6 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.6 98.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3 98.4 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.2 98.4 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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