CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os08g0426200

Gene name
Homology with Arabidopsis Similar to At3g17580: unknown protein (HF=2e+0)

Module size 6 genes

NF 0.87

%ile 99.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.98 Os08g0426200 9636.m03305 - - 2e+0 At3g17580 unknown protein O.I. H.G. S.X.
0.91 98.9 0.98 Os04g0366500 9632.m02816 - - 1e+1 At3g51060 STY1 (STYLISH 1) O.I. H.G. S.X.
0.80 94.6 0.99 Os01g0528900 9629.m03236 - - 4e+0 At4g31150 endonuclease V family protein O.I. H.G. S.X.
0.80 94.6 0.99 Os01g0521100 9629.m03165 - Hypothetical protein 3e+0 At4g10420 - O.I. H.G. S.X.
0.73 91.1 0.99 Os10g0350100 NM_195936.1 - - 4e-1 At3g47710 bHLH family protein O.I. H.G. S.X.
0.67 87.2 0.98 Os04g0134700 9632.m00384 - - 1e+1 At5g58500 LSH5 (LIGHT SENSITIVE HYPOCOTYLS 5) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
96.6 100.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
73.8 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
29.8 99.7 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.4 98.3 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3 98.1 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.021 1 GO:0006310 Any process by which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.
0.020 1 GO:0006278 The process whereby new strands of DNA are synthesized, using RNA as a template for RNA-dependent DNA polymerases (e.g. reverse transcriptase) that synthesize the new strands.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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