CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os08g0425200

Gene name
Homology with Arabidopsis Similar to At4g11870: unknown protein (HF=1e-1)

Module size 6 genes

NF 0.59

%ile 79.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.93 Os08g0425200 AK099569.1 - Conserved hypothetical protein 1e-1 At4g11870 unknown protein O.I. H.G. S.X.
0.77 93.1 0.92 Os01g0272800 NM_188072.1 - Conserved hypothetical protein 6e-1 At3g58710 WRKY69 O.I. H.G. S.X.
0.73 91.1 0.91 Os02g0774100 9630.m05279 - Thioredoxin-related domain containing protein 4e-3 At5g06690 WCRKC1 (WCRKC THIOREDOXIN 1) O.I. H.G. S.X.
0.73 91.1 0.92 Os03g0748300 AK068519.1 - Galactose mutarotase-like domain containingprotein 5e-2 At3g15780 unknown protein O.I. H.G. S.X.
0.67 87.2 0.92 Os03g0679700 AK120238.1 - Thiamine biosynthesis protein thiC 3e-125 At2g29630 THIC (ThiaminC) O.I. H.G. S.X.
0.29 31.1 0.91 Os08g0139100 AK099590.1 - DAG protein, chloroplast precursor 7e-44 At1g11430 plastid developmental protein DAG, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
37.6 99.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
21.2 99.2 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.1 98.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.4 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2 98.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7 98.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.250 1 GO:0009228 The chemical reactions and pathways resulting in the formation of thiamin (vitamin B1), a water soluble vitamin present in fresh vegetables and meats, especially liver.
0.105 1 GO:0006012 The chemical reactions and pathways involving galactose, the aldohexose galacto-hexose. D-galactose is widely distributed in combined form in plants, animals and microorganisms as a constituent of oligo- and polysaccharides; it also occurs in galactolipids and as its glucoside in lactose and melibiose.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage