CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os08g0414200

Gene name
Homology with Arabidopsis Similar to At4g21860: MSRB2 (methionine sulfoxide reductase B 2) (HF=3e-1)

Module size 23 genes

NF 0.33

%ile 36.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.79 93.6 0.82 Os08g0414200 AK102789.1 - BRCT domain containing protein 3e-1 At4g21860 MSRB2 (methionine sulfoxide reductase B 2) O.I. H.G. S.X.
0.60 79.7 0.85 Os08g0163100 AK064406.1 - - 1e-2 At2g27510 ATFD3 (ferredoxin 3) O.I. H.G. S.X.
0.46 60.9 0.91 Os12g0242900 AK064505.1 - DNA polymerase alpha subunit B family protein 3e-3 At5g54360 zinc finger (C2H2 type) family protein-related O.I. H.G. S.X.
0.41 52.4 0.92 Os03g0607600 9631.m03952 - Cyclin 9e-3 At5g43080 CYCA3 O.I. H.G. S.X.
0.41 52.4 0.93 Os07g0681600 AK073504.1 - ATP-dependent DNA helicase RecQ family protein 2e+0 At5g09830 BolA-like family protein O.I. H.G. S.X.
0.41 52.4 0.92 Os04g0185100 AK119406.1 - Conserved hypothetical protein 3e-1 At1g79070 SNARE-associated protein-related O.I. H.G. S.X.
0.40 51.1 0.94 Os11g0128400 AK102291.1 - CDC45-like protein family protein 3e-13 At3g25100 CDC45 (cell division cycle 45) O.I. H.G. S.X.
0.36 44.0 0.95 Os12g0124700 AK073156.1 - CDC45-like protein family protein 9e-11 At3g25100 CDC45 (cell division cycle 45) O.I. H.G. S.X.
0.34 40.0 0.95 Os01g0176500 AK102552.1 - Conserved hypothetical protein 1e+0 At3g57390 AGL18 O.I. H.G. S.X.
0.32 36.3 0.94 Os04g0177300 AK102094.1 - SNF2-related domain containing protein 8e-9 At5g43530 SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein O.I. H.G. S.X.
0.31 34.5 0.95 Os02g0198400 9630.m00971 - Conserved hypothetical protein 6e+0 At5g64490 binding O.I. H.G. S.X.
0.29 31.1 0.94 Os11g0180600 BP184957 - Type III restriction enzyme, res subunit familyprotein 1e+0 At4g16800 enoyl-CoA hydratase, putative O.I. H.G. S.X.
0.29 31.1 0.94 Os10g0438500 AK103093.1 - Cyclin-like F-box domain containing protein 3e-3 At4g35930 - O.I. H.G. S.X.
0.28 31.1 0.94 Os11g0552600 AK106372.1 - Hypothetical protein 8e-16 At1g59540 ZCF125 O.I. H.G. S.X.
0.28 31.1 0.94 Os02g0558600 AK063457.1 - Conserved hypothetical protein 1e+0 At4g26466 LRE (LORELEI) O.I. H.G. S.X.
0.27 27.5 0.93 Os05g0409400 AK102597.1 - MAP65/ASE1 family protein 7e-5 At2g38720 MAP65-5 (MICROTUBULE-ASSOCIATED PROTEIN 65-5) O.I. H.G. S.X.
0.27 27.5 0.95 Os02g0105700 CR291564 - - 3e+0 At3g24710 - O.I. H.G. S.X.
0.27 27.5 0.95 Os01g0765500 AK063269.1 - Hypothetical protein 3e-1 At1g63120 ATRBL2 (Arabidopsis thaliana Rhomboid-like 2) O.I. H.G. S.X.
0.23 21.2 0.93 Os05g0424900 9633.m03257 - Protein of unknown function DUF632 domaincontaining protein 2e-5 At4g35240 unknown protein O.I. H.G. S.X.
0.23 21.2 0.92 Os08g0197400 AK069625.1 - Conserved hypothetical protein 1e+0 At1g73770 unknown protein O.I. H.G. S.X.
0.23 21.2 0.90 Os04g0620200 AK060209.1 - Remorin, C-terminal region domain containingprotein 4e-2 At2g02170 remorin family protein O.I. H.G. S.X.
0.23 21.2 0.90 Os01g0869300 AK059347.1 - Hypothetical protein 7e-1 At4g13270 unknown protein O.I. H.G. S.X.
0.12 7.2 0.92 Os04g0501200 AK069193.1 - Conserved hypothetical protein 6e-5 At5g57970 methyladenine glycosylase family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.79	93.6	0.82	Os08g0414200	AK102789.1	-	BRCT domain containing protein	3e-1	At4g21860	MSRB2 (methionine sulfoxide reductase B 2)	O.I.	H.G.	S.X.
0.60	79.7	0.85	Os08g0163100	AK064406.1	-	-	1e-2	At2g27510	ATFD3 (ferredoxin 3)	O.I.	H.G.	S.X.
0.46	60.9	0.91	Os12g0242900	AK064505.1	-	DNA polymerase alpha subunit B family protein	3e-3	At5g54360	zinc finger (C2H2 type) family protein-related	O.I.	H.G.	S.X.
0.41	52.4	0.92	Os03g0607600	9631.m03952	-	Cyclin	9e-3	At5g43080	CYCA3	O.I.	H.G.	S.X.
0.41	52.4	0.93	Os07g0681600	AK073504.1	-	ATP-dependent DNA helicase RecQ family protein	2e+0	At5g09830	BolA-like family protein	O.I.	H.G.	S.X.
0.41	52.4	0.92	Os04g0185100	AK119406.1	-	Conserved hypothetical protein	3e-1	At1g79070	SNARE-associated protein-related	O.I.	H.G.	S.X.
0.40	51.1	0.94	Os11g0128400	AK102291.1	-	CDC45-like protein family protein	3e-13	At3g25100	CDC45 (cell division cycle 45)	O.I.	H.G.	S.X.
0.36	44.0	0.95	Os12g0124700	AK073156.1	-	CDC45-like protein family protein	9e-11	At3g25100	CDC45 (cell division cycle 45)	O.I.	H.G.	S.X.
0.34	40.0	0.95	Os01g0176500	AK102552.1	-	Conserved hypothetical protein	1e+0	At3g57390	AGL18	O.I.	H.G.	S.X.
0.32	36.3	0.94	Os04g0177300	AK102094.1	-	SNF2-related domain containing protein	8e-9	At5g43530	SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein	O.I.	H.G.	S.X.
0.31	34.5	0.95	Os02g0198400	9630.m00971	-	Conserved hypothetical protein	6e+0	At5g64490	binding	O.I.	H.G.	S.X.
0.29	31.1	0.94	Os11g0180600	BP184957	-	Type III restriction enzyme, res subunit familyprotein	1e+0	At4g16800	enoyl-CoA hydratase, putative	O.I.	H.G.	S.X.
0.29	31.1	0.94	Os10g0438500	AK103093.1	-	Cyclin-like F-box domain containing protein	3e-3	At4g35930	-	O.I.	H.G.	S.X.
0.28	31.1	0.94	Os11g0552600	AK106372.1	-	Hypothetical protein	8e-16	At1g59540	ZCF125	O.I.	H.G.	S.X.
0.28	31.1	0.94	Os02g0558600	AK063457.1	-	Conserved hypothetical protein	1e+0	At4g26466	LRE (LORELEI)	O.I.	H.G.	S.X.
0.27	27.5	0.93	Os05g0409400	AK102597.1	-	MAP65/ASE1 family protein	7e-5	At2g38720	MAP65-5 (MICROTUBULE-ASSOCIATED PROTEIN 65-5)	O.I.	H.G.	S.X.
0.27	27.5	0.95	Os02g0105700	CR291564	-	-	3e+0	At3g24710	-	O.I.	H.G.	S.X.
0.27	27.5	0.95	Os01g0765500	AK063269.1	-	Hypothetical protein	3e-1	At1g63120	ATRBL2 (Arabidopsis thaliana Rhomboid-like 2)	O.I.	H.G.	S.X.
0.23	21.2	0.93	Os05g0424900	9633.m03257	-	Protein of unknown function DUF632 domaincontaining protein	2e-5	At4g35240	unknown protein	O.I.	H.G.	S.X.
0.23	21.2	0.92	Os08g0197400	AK069625.1	-	Conserved hypothetical protein	1e+0	At1g73770	unknown protein	O.I.	H.G.	S.X.
0.23	21.2	0.90	Os04g0620200	AK060209.1	-	Remorin, C-terminal region domain containingprotein	4e-2	At2g02170	remorin family protein	O.I.	H.G.	S.X.
0.23	21.2	0.90	Os01g0869300	AK059347.1	-	Hypothetical protein	7e-1	At4g13270	unknown protein	O.I.	H.G.	S.X.
0.12	7.2	0.92	Os04g0501200	AK069193.1	-	Conserved hypothetical protein	6e-5	At5g57970	methyladenine glycosylase family protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
19.6 99.1 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.3 98.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.1 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7 98.0 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.6 97.9 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
19.6	99.1	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
18.3	98.9	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
11.1	98.2	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0	98.2	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9	98.1	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1	98.0	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8	98.0	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7	98.0	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.6	97.9	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3	97.9	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.051 1 GO:0006259 The chemical reactions and pathways involving DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides.

SF	Genes	GO ID	Process Name	Link to AmiGO
0.051	1	GO:0006259	The chemical reactions and pathways involving DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os08g0414200
Gene name
Homology with Arabidopsis	Similar to At4g21860: MSRB2 (methionine sulfoxide reductase B 2) (HF=3e-1)
Module size	23 genes
NF	0.33
%ile	36.7

Co-expression analysis

Gene ID Os08g0414200 Gene name Homology with ArabidopsisSimilar to At4g21860: MSRB2 (methionine sulfoxide reductase B 2) (HF=3e-1) Module size 23 genes NF 0.33 %ile 36.7

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO0.0511GO:0006259The chemical reactions and pathways involving DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os08g0414200

Gene name
Homology with Arabidopsis Similar to At4g21860: MSRB2 (methionine sulfoxide reductase B 2) (HF=3e-1)

Module size 23 genes

NF 0.33

%ile 36.7

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays