Co-expression analysis

Gene ID Os08g0400000
Gene name
Homology with ArabidopsisSimilar to At2g16460: metal ion binding (HF=5e-1)
Module size 13 genes
NF 0.28
%ile 28.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8194.80.91Os08g0400000AK069520.1-Puromycin-sensitive aminopeptidase (EC 3.4.11.-)(PSA)5e-1At2g16460metal ion bindingO.I.H.G.S.X.
0.4660.90.94Os01g07834009629.m05627-DNA repair metallo-beta-lactamase domaincontaining protein2e+0At5g05710pleckstrin homology (PH) domain-containing proteinO.I.H.G.S.X.
0.3846.90.93Os07g0439000AK106708.1-Hypothetical protein6e+0At4g16162protein bindingO.I.H.G.S.X.
0.3440.00.93Os02g0522800AK069352.1-Hypothetical protein5e-1At5g24750-O.I.H.G.S.X.
0.3338.80.95Os08g0199100AK106893.1-Hypothetical protein8e-1At1g23530unknown proteinO.I.H.G.S.X.
0.2931.10.95Os01g0100400AK101455.1-Pectinesterase-like protein2e-8At4g12420SKU5O.I.H.G.S.X.
0.2625.60.95Os06g0714400AK108610.1-Conserved hypothetical protein7e-1At3g16510C2 domain-containing proteinO.I.H.G.S.X.
0.2524.10.94Os10g0548700AK066841.1-Protein kinase domain containing protein1e-1At1g16670protein kinase family proteinO.I.H.G.S.X.
0.2219.40.96Os02g0592300AK073685.1-DNA mismatch repair protein family protein3e-17At4g02460PMS1 (POSTMEIOTIC SEGREGATION 1)O.I.H.G.S.X.
0.1813.70.96Os03g0140500AK106342.1-Protein of unknown function DUF26 domaincontaining protein3e-3At5g37660PDLP7 (PLASMODESMATA-LOCATED PROTEIN 7)O.I.H.G.S.X.
0.1712.60.95Os08g0166500AK103907.1-Hypothetical protein5e-2At3g09735DNA-binding S1FA family proteinO.I.H.G.S.X.
0.1510.30.95Os07g0642400NM_188825.1-SNF2-related domain containing protein2e-5At5g05130SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing proteinO.I.H.G.S.X.
0.138.20.95Os09g0332600AK101649.1-Hypothetical protein9e-11At1g15520PDR12 (PLEIOTROPIC DRUG RESISTANCE 12)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
22.199.3GSM195227AntherGSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
15.098.6GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
14.898.6GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
14.698.6GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.598.3GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.498.3GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.998.3GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.998.3GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.898.3GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
11.798.2GSM377086Genomic DNA - 45 day old leaf sample - IR64 wtcheckGSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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