CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os08g0378000

Gene name
Homology with Arabidopsis Similar to At4g27810: unknown protein (HF=6e-1)

Module size 12 genes

NF 0.20

%ile 17.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.87 96.6 0.86 Os08g0378000 AK067437.1 - Conserved hypothetical protein 6e-1 At4g27810 unknown protein O.I. H.G. S.X.
0.40 51.1 0.87 Os07g0534700 AK060565.1 - Protein kinase family protein 3e-4 At4g23310 receptor-like protein kinase, putative O.I. H.G. S.X.
0.35 41.7 0.91 Os05g0193000 9633.m00910 - - 3e-1 At3g58470 methyltransferase/ nucleic acid binding O.I. H.G. S.X.
0.32 36.3 0.87 Os02g0227600 AK111918.1 - Leucine-rich repeat, plant specific containingprotein 5e-2 At3g06840 unknown protein O.I. H.G. S.X.
0.22 19.4 0.90 Os04g0463200 9632.m03679 - Conserved hypothetical protein 2e+0 At3g29300 unknown protein O.I. H.G. S.X.
0.21 17.9 0.88 Os11g0158700 9639.m00528 - POX domain containing protein 1e-1 At2g35940 BLH1 (BEL1-LIKE HOMEODOMAIN 1) O.I. H.G. S.X.
0.15 10.3 0.91 Os06g0257500 CR293246 - Conserved hypothetical protein 2e+1 At5g42040 RPN12b (Regulatory Particle Non-ATPase 12b) O.I. H.G. S.X.
0.15 10.3 0.91 Os01g0953100 AK068882.1 - Protein of unknown function DUF594 family protein 6e-3 At4g19080 unknown protein O.I. H.G. S.X.
0.13 8.2 0.91 Os01g0665500 AK111013.1 - WRKY transcription factor 34 1e-3 At3g01970 WRKY45 O.I. H.G. S.X.
0.13 8.2 0.91 Os04g0598800 AK111623.1 - The stop codon is not identified. 3e-7 At1g16260 protein kinase family protein O.I. H.G. S.X.
0.11 6.5 0.93 Os08g0404400 9636.m03120 - Hypothetical protein 3e-20 At4g10710 SPT16 (global transcription factor C) O.I. H.G. S.X.
0.07 3.7 0.91 Os04g0551700 AK068663.1 - PAP fibrillin family protein 1e+0 At3g44935 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
50.9 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.6 98.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.4 98.2 GSM159271 Rice coleoptiles, 4 days old, anoxic, REPLICATE 1 (Sample #11) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
10.9 98.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.9 97.8 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.8 97.8 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5 97.7 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.2 97.7 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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