Co-expression analysis

Gene ID Os08g0366100
Gene name
Homology with ArabidopsisSimilar to At2g42680: MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A) (HF=6e-11)
Module size 6 genes
NF 0.69
%ile 91.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8395.80.98Os08g0366100AK120339.1-EDF-1 protein (HMBF1alpha) (Endothelialdifferentiation-related factor 1, isoform alpha)(Fragment)6e-11At2g42680MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A)O.I.H.G.S.X.
0.7391.10.98Os06g0130900D10965.1-Histone H3.31e-3At4g40030histone H3.2O.I.H.G.S.X.
0.6787.20.98Os07g0114300AK062043.1-Conserved hypothetical protein3e-1At2g23090unknown proteinO.I.H.G.S.X.
0.6181.20.98Os11g0425600AK121882.1-Four F5 protein family protein5e+0At5g42040RPN12b (Regulatory Particle Non-ATPase 12b)O.I.H.G.S.X.
0.5777.00.98Os02g0121300L29470.1-Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8)(PPIase) (Rotamase) (Cyclophilin) (Cyclosporin A-bindingprotein)9e-12At4g38740ROC1 (ROTAMASE CYP 1)O.I.H.G.S.X.
0.4762.30.98Os03g0670700AK119242.1-Glycine-rich RNA-binding protein GRP1A2e-6At4g39260GR-RBP8O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.296.7GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
3.995.8GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
3.895.7GSM375647Taichung 65_shoot_replicate 1GSE15046Transcriptome analysis of gibberellin-signaling mutants in riceLink to GEO
3.595.3GSM375648Taichung 65_shoot_replicate 2GSE15046Transcriptome analysis of gibberellin-signaling mutants in riceLink to GEO
3.294.9GSM278845WuYun3-RSV infected, biological rep2GSE11025Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infectionLink to GEO
3.194.8GSM375649Taichung 65_shoot_replicate 3GSE15046Transcriptome analysis of gibberellin-signaling mutants in riceLink to GEO
2.794.1GSM159180Mature leaf, biological rep 1GSE6893Expression data for reproductive development in riceLink to GEO
2.693.8GSM375767gid1-3_ shoot_replicate 3GSE15046Transcriptome analysis of gibberellin-signaling mutants in riceLink to GEO
2.593.6GSM377086Genomic DNA - 45 day old leaf sample - IR64 wtcheckGSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
2.593.6GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0491GO:0051276A process that is carried out at the cellular level that results in the assembly, arrangement of constituent parts, or disassembly of chromosomes, structures composed of a very long molecule of DNA and associated proteins that carries hereditary information.Link to AmiGO
0.0481GO:0006334The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.Link to AmiGO
0.0241GO:0006457The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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