CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os08g0357300

Gene name
Homology with Arabidopsis Similar to At1g75388: CPuORF5 (Conserved peptide upstream open reading frame 5) (HF=8e-8)

Module size 6 genes

NF 0.05

%ile 3.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 94.6 0.84 Os08g0357300 AK100580.1 - Basic-leucine zipper (bZIP) transcription factordomain containing protein 8e-8 At1g75388 CPuORF5 (Conserved peptide upstream open reading frame 5) O.I. H.G. S.X.
0.36 44.0 0.88 Os06g0168500 AK100316.1 - Syntaxin-like protein (Fragment) 3e-6 At3g03800 SYP131 (SYNTAXIN OF PLANTS 131) O.I. H.G. S.X.
0.11 6.5 0.87 Os10g0442900 CB674801 - ABC transporter domain containing protein 2e-9 At1g53390 ATPase, coupled to transmembrane movement of substances O.I. H.G. S.X.
0.04 2.0 0.86 Os08g0265500 AK100508.1 - AFG1-like ATPase family protein 5e-4 At4g28070 AFG1-like ATPase family protein O.I. H.G. S.X.
0.03 1.4 0.86 Os03g0743500 AK067697.1 - Calmodulin 1 (Fragment) 4e-4 At5g21274 CAM6 (CALMODULIN 6) O.I. H.G. S.X.
0.01 0.5 0.87 Os05g0475300 AK065069.1 - VHS domain containing protein 1e-6 At5g01760 VHS domain-containing protein / GAT domain-containing protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
28.0 99.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.3 98.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.6 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8 98.4 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7 98.4 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.154 1 GO:0006891 The directed movement of substances within the Golgi, mediated by small transport vesicles. These either fuse with the cis-Golgi or with each other to form the membrane stacks known as the cis-Golgi reticulum (network).
0.041 2 GO:0006886 The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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