Co-expression analysis

Gene ID Os08g0355400
Gene name
Homology with ArabidopsisSimilar to At1g32190: - (HF=2e-1)
Module size 9 genes
NF 0.26
%ile 25.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9499.40.87Os08g0355400AK060790.1-Plant protein of unknown function family protein2e-1At1g32190-O.I.H.G.S.X.
0.5573.70.94Os05g0419000AK067277.1-Alpha/beta hydrolase family protein2e-1At5g38520hydrolase, alpha/beta fold family proteinO.I.H.G.S.X.
0.3032.70.93Os07g0601000AK067272.1-NADPH HC toxin reductase (Fragment)6e-1At5g44610MAP18 (Microtubule-associated Protein 18)O.I.H.G.S.X.
0.2931.10.94Os01g0869800AK058284.1-Photosystem II subunit PsbS4e-8At1g44575NPQ4 (NONPHOTOCHEMICAL QUENCHING)O.I.H.G.S.X.
0.2625.60.96Os06g0185900AU101367-Glutathione peroxidase2e-22At2g25080ATGPX1 (GLUTATHIONE PEROXIDASE 1)O.I.H.G.S.X.
0.2117.90.95Os02g0103800AK065309.1-Ferredoxin--NADP reductase, leaf isozyme,chloroplast precursor (EC 1.18.1.2) (FNR)5e-48At5g66190FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1)O.I.H.G.S.X.
0.1712.60.95Os01g0896500AK120594.1-Rhodanese-like domain containing protein1e+0At3g59780-O.I.H.G.S.X.
0.1510.30.95Os01g0912700AK068528.1-Conserved hypothetical protein1e-1At2g01340unknown proteinO.I.H.G.S.X.
0.127.20.96Os07g0658400AK120896.1-Ferredoxin-dependent glutamate synthase,chloroplast (EC 1.4.7.1) (Fd- GOGAT)8e-81At5g04140GLU1 (GLUTAMATE SYNTHASE 1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
48.599.9GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
10.698.1GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
10.198.0GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.097.8GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.897.8GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.797.8GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.697.8GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
8.497.7GSM377074Genomic DNA - 45 day old leaf sample - mutant g282GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.097.6GSM377085Genomic DNA - 45 day old leaf sample - mutant f2045GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.897.6GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1541GO:0006537The chemical reactions and pathways resulting in the formation of glutamate, the anion of 2-aminopentanedioic acid.Link to AmiGO
0.1181GO:0006807The chemical reactions and pathways involving various organic and inorganic nitrogenous compounds; includes nitrogen fixation, nitrification, denitrification, assimilatory/dissimilatory nitrate reduction and the interconversion of nitrogenous organic matter and ammonium.Link to AmiGO
0.0211GO:0006979A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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