CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os08g0340850

Gene name
Homology with Arabidopsis Similar to At2g37950: zinc finger (C3HC4-type RING finger) family protein (HF=4e-1)

Module size 6 genes

NF 0.61

%ile 82.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 93.1 0.99 Os08g0340850 9636.m02478 - - 4e-1 At2g37950 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.73 91.1 0.99 Os06g0330000 9634.m02201 - - 7e-1 At1g75690 chaperone protein dnaJ-related O.I. H.G. S.X.
0.61 81.2 0.99 Os11g0552300 9639.m03151 - - 1e-1 At5g60680 unknown protein O.I. H.G. S.X.
0.55 73.7 0.99 Os06g0111901 NM_185397.1 - - 3e-1 At1g71740 unknown protein O.I. H.G. S.X.
0.50 68.0 0.99 Os10g0335050 NM_195803.1 - - 5e+0 At4g14080 MEE48 (maternal effect embryo arrest 48) O.I. H.G. S.X.
0.27 27.5 0.99 Os02g0136400 CB638965 - Conserved hypothetical protein 2e+0 At5g44560 VPS2.2 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.3 98.4 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.9 98.3 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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