CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os08g0325400

Gene name
Homology with Arabidopsis Similar to At3g23460: cyclopropane fatty acid synthase-related (HF=2e+0)

Module size 40 genes

NF 0.44

%ile 55.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.93 99.2 0.88 Os08g0325400 9636.m02302 - - 2e+0 At3g23460 cyclopropane fatty acid synthase-related O.I. H.G. S.X.
0.75 91.9 0.93 Os01g0520800 AK102454.1 - Hypothetical protein 8e+0 At5g07560 GRP20 (GLYCINE-RICH PROTEIN 20) O.I. H.G. S.X.
0.65 83.8 0.94 Os06g0186000 AK119326.1 - Protein kinase-like domain containing protein 2e-3 At5g49660 leucine-rich repeat transmembrane protein kinase, putative O.I. H.G. S.X.
0.61 81.2 0.94 Os10g0562200 9638.m03760 - Lipase-like protein 8e-1 At1g06800 lipase class 3 family protein O.I. H.G. S.X.
0.55 73.7 0.94 Os08g0463900 BI806138 - Conserved hypothetical protein 1e+0 At1g80745 unknown protein O.I. H.G. S.X.
0.55 73.7 0.95 Os04g0638000 9632.m05301 - - 3e-1 At1g70895 CLE17 (CLAVATA3/ESR-RELATED 17) O.I. H.G. S.X.
0.54 71.9 0.97 Os05g0193700 9633.m00918 - IQ calmodulin-binding region domain containingprotein 2e-1 At3g60020 ASK5 (ARABIDOPSIS SKP1-LIKE 5) O.I. H.G. S.X.
0.53 71.3 0.96 Os03g0373100 AK107517.1 - Conserved hypothetical protein 8e-1 At5g26070 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.52 69.6 0.94 Os05g0457400 9633.m03551 - Ribosomal protein L40e family protein 9e-34 At3g52590 UBQ1 (UBIQUITIN EXTENSION PROTEIN 1) O.I. H.G. S.X.
0.51 68.7 0.94 Os11g0250600 9639.m01333 - - 6e+0 At5g13510 ribosomal protein L10 family protein O.I. H.G. S.X.
0.50 68.0 0.94 Os12g0177100 9640.m00707 - - 4e+0 At1g37000 beta-galactosidase O.I. H.G. S.X.
0.49 64.4 0.94 Os06g0284500 9634.m01755 - Zn-finger, Dof type domain containing protein 2e-14 At2g37590 Dof-type zinc finger domain-containing protein O.I. H.G. S.X.
0.49 64.4 0.94 Os08g0315966 9636.m02186 - - 6e-3 At2g24970 unknown protein O.I. H.G. S.X.
0.49 64.4 0.95 Os08g0362900 9636.m02721 - - 1e+0 At1g25682 cell cycle control protein-related O.I. H.G. S.X.
0.49 64.4 0.94 Os08g0183200 9636.m00795 - - 7e+0 At5g47730 SEC14 cytosolic factor, putative / polyphosphoinositide-binding protein, putative O.I. H.G. S.X.
0.48 63.7 0.94 Os12g0545400 9640.m03486 - - 5e-2 At2g45050 zinc finger (GATA type) family protein O.I. H.G. S.X.
0.48 63.7 0.96 Os04g0136000 9632.m00379 - - 8e-2 At5g43070 WPP1 (WPP domain protein 1) O.I. H.G. S.X.
0.45 58.8 0.94 Os11g0166300 9639.m00593 - Hypothetical protein 1e+0 At2g28440 proline-rich family protein O.I. H.G. S.X.
0.45 58.8 0.95 Os12g0526000 BA000029.2 - - 1e+0 At4g27620 unknown protein O.I. H.G. S.X.
0.44 58.1 0.95 Os07g0405350 9635.m02098 - - 4e+0 At5g44065 unknown protein O.I. H.G. S.X.
0.43 55.4 0.95 Os02g0502200 9630.m02854 - - 6e+0 At2g32960 tyrosine specific protein phosphatase family protein O.I. H.G. S.X.
0.43 55.4 0.94 Os06g0689600 9634.m04626 - Protein kinase domain containing protein 2e+0 At3g15190 chloroplast 30S ribosomal protein S20, putative O.I. H.G. S.X.
0.42 53.9 0.96 Os11g0201365 9639.m00894 - - 9e+0 At4g32285 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related O.I. H.G. S.X.
0.41 52.4 0.93 Os08g0181900 9636.m00785 - - 6e-1 At1g10030 ERG28 (Arabidopsis homolog of yeast ergosterol28) O.I. H.G. S.X.
0.41 52.4 0.95 Os08g0428500 9636.m03322 - - 2e-1 At3g12685 - O.I. H.G. S.X.
0.40 51.1 0.93 Os11g0251200 9639.m01337 - Ankyrin repeat containing protein 3e+0 At4g11940 unknown protein O.I. H.G. S.X.
0.39 48.3 0.96 Os09g0271900 9637.m00751 - - 7e-2 At5g04280 glycine-rich RNA-binding protein O.I. H.G. S.X.
0.39 48.3 0.91 Os11g0604800 9639.m03564 - - 4e-2 At5g63530 ATFP3 O.I. H.G. S.X.
0.39 48.3 0.95 Os07g0653000 9635.m04618 - BLE2 protein 3e+0 At5g60850 OBP4 O.I. H.G. S.X.
0.38 46.9 0.92 Os01g0171900 9629.m00703 - - 6e-1 At3g18540 unknown protein O.I. H.G. S.X.
0.36 44.0 0.94 Os11g0189000 9639.m00803 - - 4e-1 At2g40810 AtATG18c O.I. H.G. S.X.
0.36 44.0 0.95 Os01g0737500 AK105965.1 - Protein of unknown function UPF0005 family protein 9e-1 At2g25100 ribonuclease HII family protein O.I. H.G. S.X.
0.35 41.7 0.95 Os01g0292600 9629.m01834 - - 3e+0 At5g16550 unknown protein O.I. H.G. S.X.
0.35 41.7 0.95 Os01g0333900 9629.m02224 - - 8e+0 At5g08185 MIR162A (MICRORNA 162A) O.I. H.G. S.X.
0.33 38.8 0.93 Os11g0676150 9639.m04186 - - 9e-1 At3g17626 - O.I. H.G. S.X.
0.33 38.8 0.95 Os07g0112200 NM_194109.1 - - 5e+0 At1g03982 - O.I. H.G. S.X.
0.33 38.8 0.96 Os12g0547000 9640.m03491 - - 4e+0 At2g37530 unknown protein O.I. H.G. S.X.
0.33 38.8 0.94 Os10g0537100 9638.m03537 - - 3e-11 At2g36080 DNA-binding protein, putative O.I. H.G. S.X.
0.32 36.3 0.93 Os07g0173800 9635.m00722 - - 2e-1 At1g22640 MYB3 (MYB DOMAIN PROTEIN 3) O.I. H.G. S.X.
0.27 27.5 0.87 Os01g0384500 9629.m02758 - - 2e+0 At5g65180 - O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.93	99.2	0.88	Os08g0325400	9636.m02302	-	-	2e+0	At3g23460	cyclopropane fatty acid synthase-related	O.I.	H.G.	S.X.
0.75	91.9	0.93	Os01g0520800	AK102454.1	-	Hypothetical protein	8e+0	At5g07560	GRP20 (GLYCINE-RICH PROTEIN 20)	O.I.	H.G.	S.X.
0.65	83.8	0.94	Os06g0186000	AK119326.1	-	Protein kinase-like domain containing protein	2e-3	At5g49660	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.
0.61	81.2	0.94	Os10g0562200	9638.m03760	-	Lipase-like protein	8e-1	At1g06800	lipase class 3 family protein	O.I.	H.G.	S.X.
0.55	73.7	0.94	Os08g0463900	BI806138	-	Conserved hypothetical protein	1e+0	At1g80745	unknown protein	O.I.	H.G.	S.X.
0.55	73.7	0.95	Os04g0638000	9632.m05301	-	-	3e-1	At1g70895	CLE17 (CLAVATA3/ESR-RELATED 17)	O.I.	H.G.	S.X.
0.54	71.9	0.97	Os05g0193700	9633.m00918	-	IQ calmodulin-binding region domain containingprotein	2e-1	At3g60020	ASK5 (ARABIDOPSIS SKP1-LIKE 5)	O.I.	H.G.	S.X.
0.53	71.3	0.96	Os03g0373100	AK107517.1	-	Conserved hypothetical protein	8e-1	At5g26070	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.
0.52	69.6	0.94	Os05g0457400	9633.m03551	-	Ribosomal protein L40e family protein	9e-34	At3g52590	UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)	O.I.	H.G.	S.X.
0.51	68.7	0.94	Os11g0250600	9639.m01333	-	-	6e+0	At5g13510	ribosomal protein L10 family protein	O.I.	H.G.	S.X.
0.50	68.0	0.94	Os12g0177100	9640.m00707	-	-	4e+0	At1g37000	beta-galactosidase	O.I.	H.G.	S.X.
0.49	64.4	0.94	Os06g0284500	9634.m01755	-	Zn-finger, Dof type domain containing protein	2e-14	At2g37590	Dof-type zinc finger domain-containing protein	O.I.	H.G.	S.X.
0.49	64.4	0.94	Os08g0315966	9636.m02186	-	-	6e-3	At2g24970	unknown protein	O.I.	H.G.	S.X.
0.49	64.4	0.95	Os08g0362900	9636.m02721	-	-	1e+0	At1g25682	cell cycle control protein-related	O.I.	H.G.	S.X.
0.49	64.4	0.94	Os08g0183200	9636.m00795	-	-	7e+0	At5g47730	SEC14 cytosolic factor, putative / polyphosphoinositide-binding protein, putative	O.I.	H.G.	S.X.
0.48	63.7	0.94	Os12g0545400	9640.m03486	-	-	5e-2	At2g45050	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.
0.48	63.7	0.96	Os04g0136000	9632.m00379	-	-	8e-2	At5g43070	WPP1 (WPP domain protein 1)	O.I.	H.G.	S.X.
0.45	58.8	0.94	Os11g0166300	9639.m00593	-	Hypothetical protein	1e+0	At2g28440	proline-rich family protein	O.I.	H.G.	S.X.
0.45	58.8	0.95	Os12g0526000	BA000029.2	-	-	1e+0	At4g27620	unknown protein	O.I.	H.G.	S.X.
0.44	58.1	0.95	Os07g0405350	9635.m02098	-	-	4e+0	At5g44065	unknown protein	O.I.	H.G.	S.X.
0.43	55.4	0.95	Os02g0502200	9630.m02854	-	-	6e+0	At2g32960	tyrosine specific protein phosphatase family protein	O.I.	H.G.	S.X.
0.43	55.4	0.94	Os06g0689600	9634.m04626	-	Protein kinase domain containing protein	2e+0	At3g15190	chloroplast 30S ribosomal protein S20, putative	O.I.	H.G.	S.X.
0.42	53.9	0.96	Os11g0201365	9639.m00894	-	-	9e+0	At4g32285	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related	O.I.	H.G.	S.X.
0.41	52.4	0.93	Os08g0181900	9636.m00785	-	-	6e-1	At1g10030	ERG28 (Arabidopsis homolog of yeast ergosterol28)	O.I.	H.G.	S.X.
0.41	52.4	0.95	Os08g0428500	9636.m03322	-	-	2e-1	At3g12685	-	O.I.	H.G.	S.X.
0.40	51.1	0.93	Os11g0251200	9639.m01337	-	Ankyrin repeat containing protein	3e+0	At4g11940	unknown protein	O.I.	H.G.	S.X.
0.39	48.3	0.96	Os09g0271900	9637.m00751	-	-	7e-2	At5g04280	glycine-rich RNA-binding protein	O.I.	H.G.	S.X.
0.39	48.3	0.91	Os11g0604800	9639.m03564	-	-	4e-2	At5g63530	ATFP3	O.I.	H.G.	S.X.
0.39	48.3	0.95	Os07g0653000	9635.m04618	-	BLE2 protein	3e+0	At5g60850	OBP4	O.I.	H.G.	S.X.
0.38	46.9	0.92	Os01g0171900	9629.m00703	-	-	6e-1	At3g18540	unknown protein	O.I.	H.G.	S.X.
0.36	44.0	0.94	Os11g0189000	9639.m00803	-	-	4e-1	At2g40810	AtATG18c	O.I.	H.G.	S.X.
0.36	44.0	0.95	Os01g0737500	AK105965.1	-	Protein of unknown function UPF0005 family protein	9e-1	At2g25100	ribonuclease HII family protein	O.I.	H.G.	S.X.
0.35	41.7	0.95	Os01g0292600	9629.m01834	-	-	3e+0	At5g16550	unknown protein	O.I.	H.G.	S.X.
0.35	41.7	0.95	Os01g0333900	9629.m02224	-	-	8e+0	At5g08185	MIR162A (MICRORNA 162A)	O.I.	H.G.	S.X.
0.33	38.8	0.93	Os11g0676150	9639.m04186	-	-	9e-1	At3g17626	-	O.I.	H.G.	S.X.
0.33	38.8	0.95	Os07g0112200	NM_194109.1	-	-	5e+0	At1g03982	-	O.I.	H.G.	S.X.
0.33	38.8	0.96	Os12g0547000	9640.m03491	-	-	4e+0	At2g37530	unknown protein	O.I.	H.G.	S.X.
0.33	38.8	0.94	Os10g0537100	9638.m03537	-	-	3e-11	At2g36080	DNA-binding protein, putative	O.I.	H.G.	S.X.
0.32	36.3	0.93	Os07g0173800	9635.m00722	-	-	2e-1	At1g22640	MYB3 (MYB DOMAIN PROTEIN 3)	O.I.	H.G.	S.X.
0.27	27.5	0.87	Os01g0384500	9629.m02758	-	-	2e+0	At5g65180	-	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
36.6 99.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
35.2 99.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
28.2 99.6 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.3 98.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4 98.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4 98.1 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4 98.1 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
36.6	99.8	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
35.2	99.8	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
28.2	99.6	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
12.3	98.3	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5	98.2	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3	98.2	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6	98.1	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4	98.1	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4	98.1	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4	98.1	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.025 1 GO:0006629 The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
0.024 1 GO:0006418 The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.

SF	Genes	GO ID	Process Name	Link to AmiGO
0.025	1	GO:0006629	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
0.024	1	GO:0006418	The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os08g0325400
Gene name
Homology with Arabidopsis	Similar to At3g23460: cyclopropane fatty acid synthase-related (HF=2e+0)
Module size	40 genes
NF	0.44
%ile	55.9

Co-expression analysis

Gene ID Os08g0325400 Gene name Homology with ArabidopsisSimilar to At3g23460: cyclopropane fatty acid synthase-related (HF=2e+0) Module size 40 genes NF 0.44 %ile 55.9

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os08g0325400

Gene name
Homology with Arabidopsis Similar to At3g23460: cyclopropane fatty acid synthase-related (HF=2e+0)

Module size 40 genes

NF 0.44

%ile 55.9

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays