Co-expression analysis

Gene ID Os08g0318500
Gene name
Homology with ArabidopsisSimilar to At3g10380: SEC8 (SUBUNIT OF EXOCYST COMPLEX 8) (HF=4e-1)
Module size 12 genes
NF 0.47
%ile 60.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6987.90.97Os08g0318500AK070862.1-Sec8 exocyst complex component specific domaincontaining protein4e-1At3g10380SEC8 (SUBUNIT OF EXOCYST COMPLEX 8)O.I.H.G.S.X.
0.6181.20.97Os07g0657200AK072927.1-WD40-like domain containing protein3e-8At3g63460WD-40 repeat family proteinO.I.H.G.S.X.
0.5978.00.98Os03g0355600AK068938.1-Adapter-related protein complex 1 beta 1 subunit(Beta-adaptin 1) (Adaptor protein complex AP-1 beta-1subunit) (Golgi adaptor HA1/AP1 adaptin beta subunit)(Clathrin assembly protein complex 1 beta large chain).Splice isoform B0At4g23460beta-adaptin, putativeO.I.H.G.S.X.
0.5371.30.98Os02g0537900AK070310.1-Vacuolar-type H+-translocating inorganicpyrophosphatase (EC 3.6.1.1)5e-87At1g16780vacuolar-type H+-translocating inorganic pyrophosphatase, putativeO.I.H.G.S.X.
0.5068.00.97Os03g0801600AK069591.1-Vacuolar protein sorting-associated protein 35family protein2e-37At1g75850VPS35B (VPS35 HOMOLOG B)O.I.H.G.S.X.
0.4660.90.98Os02g0690700AU030655-Clathrin adaptor complex, medium chain familyprotein3e+0At1g19770ATPUP14O.I.H.G.S.X.
0.4152.40.98Os02g0297600AK122023.1-Protein of unknown function DUF707 family protein8e-20At1g67850unknown proteinO.I.H.G.S.X.
0.4051.10.97Os04g0129500AK071986.1-Sec23/Sec24 zinc finger domain containing protein7e-31At3g07100protein transport protein Sec24, putativeO.I.H.G.S.X.
0.4051.10.98Os03g0227000AK068454.1-Coatomer gamma subunit (Gamma-coat protein)(Gamma-COP)1e-25At4g34450coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putativeO.I.H.G.S.X.
0.3846.90.97Os12g0104800AK058259.1--2e-138At3g08530clathrin heavy chain, putativeO.I.H.G.S.X.
0.3440.00.97Os08g0323000AK064573.1-Conserved hypothetical protein5e-5At5g61970signal recognition particle-related / SRP-relatedO.I.H.G.S.X.
0.2931.10.97Os03g0784400AK103474.1-Conserved hypothetical protein3e-19At3g22290unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
26.399.5GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
23.599.4GSM195228EmbryoGSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
10.698.1GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.198.0GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.597.9GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.597.9GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.497.9GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
9.497.9GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.297.9GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.197.9GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1431GO:0006904The initial attachment of a vesicle membrane to a target membrane, mediated by proteins protruding from the membrane of the vesicle and the target membrane, during exocytosis.Link to AmiGO
0.0531GO:0015992The directed movement of protons (hydrogen ions) into, out of, within or between cells.Link to AmiGO
0.0271GO:0015031The directed movement of proteins into, out of, within or between cells.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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