Co-expression analysis

Gene ID Os08g0301500
Gene name
Homology with ArabidopsisSimilar to At5g20280: ATSPS1F (sucrose phosphate synthase 1F) (HF=2e-31)
Module size 7 genes
NF 0.33
%ile 35.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5777.00.94Os08g0301500AK101676.1-Sucrose-phosphate synthase 2 (EC 2.4.1.14)(Fragment)2e-31At5g20280ATSPS1F (sucrose phosphate synthase 1F)O.I.H.G.S.X.
0.4051.10.97Os10g0455900AK072120.1-Protein of unknown function DUF1336 domaincontaining protein7e-21At5g45560pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing proteinO.I.H.G.S.X.
0.3644.00.96Os02g0201000AK064792.1-Conserved hypothetical protein7e-2At5g25360unknown proteinO.I.H.G.S.X.
0.3134.50.96Os08g0122000AK067159.1-B' regulatory subunit of PP2A6e-12At3g26020serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putativeO.I.H.G.S.X.
0.3032.70.96Os02g0106800AK060675.1-Conserved hypothetical protein3e-6At4g10430-O.I.H.G.S.X.
0.2524.10.96Os02g0709800AK068743.1-RabGAP/TBC domain containing protein2e-9At5g52580RAB GTPase activatorO.I.H.G.S.X.
0.1611.30.96Os07g0607300AK102747.1-Agenet domain containing protein2e-2At3g4459060S acidic ribosomal protein P2 (RPP2D)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.798.4GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.598.3GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.198.2GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.598.1GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.998.0GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.597.9GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.497.9GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.197.9GSM377086Genomic DNA - 45 day old leaf sample - IR64 wtcheckGSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.197.9GSM377085Genomic DNA - 45 day old leaf sample - mutant f2045GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.097.8GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0291GO:0007165The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell.Link to AmiGO
0.0151GO:0009058The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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