CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os08g0275400

Gene name
Homology with Arabidopsis Similar to At5g50740: metal ion binding (HF=1e+0)

Module size 6 genes

NF 0.59

%ile 80.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 95.8 0.99 Os08g0275400 9636.m01744 - - 1e+0 At5g50740 metal ion binding O.I. H.G. S.X.
0.61 81.2 0.99 Os05g0287100 9633.m01925 - - 9e+0 At5g27541 - O.I. H.G. S.X.
0.57 77.0 0.99 Os04g0265400 9632.m01771 - - 9e+0 At1g32920 unknown protein O.I. H.G. S.X.
0.57 77.0 0.99 Os11g0138225 9639.m00338 - - 1e+1 At5g16980 NADP-dependent oxidoreductase, putative O.I. H.G. S.X.
0.50 68.0 0.99 Os01g0522800 CB627985 - ARM repeat fold domain containing protein 2e+0 At4g10880 unknown protein O.I. H.G. S.X.
0.39 48.3 0.99 Os03g0601400 9631.m03890 - - 5e+0 At5g06470 glutaredoxin family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.83	95.8	0.99	Os08g0275400	9636.m01744	-	-	1e+0	At5g50740	metal ion binding	O.I.	H.G.	S.X.
0.61	81.2	0.99	Os05g0287100	9633.m01925	-	-	9e+0	At5g27541	-	O.I.	H.G.	S.X.
0.57	77.0	0.99	Os04g0265400	9632.m01771	-	-	9e+0	At1g32920	unknown protein	O.I.	H.G.	S.X.
0.57	77.0	0.99	Os11g0138225	9639.m00338	-	-	1e+1	At5g16980	NADP-dependent oxidoreductase, putative	O.I.	H.G.	S.X.
0.50	68.0	0.99	Os01g0522800	CB627985	-	ARM repeat fold domain containing protein	2e+0	At4g10880	unknown protein	O.I.	H.G.	S.X.
0.39	48.3	0.99	Os03g0601400	9631.m03890	-	-	5e+0	At5g06470	glutaredoxin family protein	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.63	82.7	0.99	Os09g0117301	9637.m00131	-	-	2e+0	At2g22460	unknown protein	O.I.	H.G.	S.X.
0.56	76.3	0.97	Os07g0266100	9635.m01624	-	-	6e+0	At5g13850	NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3)	O.I.	H.G.	S.X.
0.53	71.3	0.99	Os04g0192733	9632.m01032	-	-	3e+0	At5g58530	glutaredoxin family protein	O.I.	H.G.	S.X.
0.50	68.0	0.99	Os05g0558750	9633.m04529	-	-	8e+0	At3g19790	unknown protein	O.I.	H.G.	S.X.
0.50	68.0	0.99	Os10g0213900	9638.m01323	-	-	1e+0	At2g35765	unknown protein	O.I.	H.G.	S.X.
0.50	68.0	0.99	Os01g0367800	NM_193806.1	-	-	3e-1	At5g09310	unknown protein	O.I.	H.G.	S.X.
0.47	62.3	0.97	Os12g0117300	AK070296.1	-	Hypothetical protein	1e-1	At3g27350	unknown protein	O.I.	H.G.	S.X.
0.46	60.9	0.99	Os01g0283400	AK119993.1	-	Conserved hypothetical protein	3e-1	At5g06480	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	O.I.	H.G.	S.X.
0.43	55.4	0.99	Os10g0509600	9638.m03262	-	Conserved hypothetical protein	3e+0	At5g11270	OCP3 (OVEREXPRESSOR OF CATIONIC PEROXIDASE 3)	O.I.	H.G.	S.X.
0.43	55.4	0.99	Os09g0461601	9637.m02526	-	-	4e+0	At4g14465	DNA-binding protein-related	O.I.	H.G.	S.X.
0.43	55.4	0.99	Os11g0162300	9639.m00559	-	Hypothetical protein	2e+0	At4g30996	unknown protein	O.I.	H.G.	S.X.
0.40	51.1	0.98	Os03g0592900	9631.m03808	-	-	5e+0	At2g05786	unknown protein	O.I.	H.G.	S.X.
0.40	51.1	0.99	Os03g0568700	9631.m03556	-	-	4e+0	At1g79780	-	O.I.	H.G.	S.X.
0.40	51.1	0.99	Os07g0145600	NM_186298.1	-	-	3e-1	At5g11260	HY5 (ELONGATED HYPOCOTYL 5)	O.I.	H.G.	S.X.
0.40	51.1	0.99	Os05g0175000	9633.m00739	-	-	3e+0	At4g22000	unknown protein	O.I.	H.G.	S.X.
0.39	48.3	0.97	Os01g0373200	9632.m03113	-	-	2e+0	At5g17360	-	O.I.	H.G.	S.X.
0.38	46.9	0.99	Os09g0551400	9637.m03224	-	-	2e-5	At4g23280	protein kinase, putative	O.I.	H.G.	S.X.
0.36	44.0	0.99	Os05g0531800	9633.m04266	-	-	2e+0	At3g01960	unknown protein	O.I.	H.G.	S.X.
0.36	44.0	0.99	Os06g0642200	9634.m04198	-	-	2e-1	At4g13310	CYP71A20	O.I.	H.G.	S.X.
0.36	44.0	0.99	Os10g0463600	NM_196898.1	-	RNA-directed DNA polymerase (Reversetranscriptase) domain containing protein	1e+0	At4g08025	unknown protein	O.I.	H.G.	S.X.
0.35	41.7	0.98	Os09g0271000	AK102955.1	-	Conserved hypothetical protein	2e+0	At5g55890	unknown protein	O.I.	H.G.	S.X.
0.33	38.8	0.98	Os01g0789000	9629.m05678	-	Cyclin-like F-box domain containing protein	2e-1	At3g25890	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.
0.33	38.8	0.98	Os03g0205300	9631.m00991	-	-	1e-10	At2g14760	basic helix-loop-helix protein / bHLH protein	O.I.	H.G.	S.X.
0.33	38.8	0.98	Os07g0630600	9635.m04381	-	-	2e+0	At3g49270	unknown protein	O.I.	H.G.	S.X.
0.33	38.8	0.99	Os12g0236633	9640.m01296	-	-	2e-1	At3g42385	unknown protein	O.I.	H.G.	S.X.
0.33	38.8	0.99	Os11g0294200	9639.m01755	-	-	6e-1	At1g73830	BEE3 (BR ENHANCED EXPRESSION 3)	O.I.	H.G.	S.X.
0.32	36.3	0.99	Os02g0268050	9630.m01571	-	-	1e-1	At2g40610	ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8)	O.I.	H.G.	S.X.
0.31	34.5	0.98	Os09g0396100	9637.m01985	-	-	2e-2	At1g64460	phosphatidylinositol 3- and 4-kinase family protein	O.I.	H.G.	S.X.
0.31	34.5	0.99	Os01g0252200	AK071420.1	-	Conserved hypothetical protein	1e+1	At5g15290	integral membrane family protein	O.I.	H.G.	S.X.
0.30	32.7	0.98	Os04g0404000	AK107819.1	-	Hypothetical protein	4e+0	At2g16020	unknown protein	O.I.	H.G.	S.X.
0.30	32.7	0.99	Os03g0391800	9640.m03376	-	-	5e-1	At3g56400	WRKY70	O.I.	H.G.	S.X.
0.29	31.1	0.97	Os01g0711700	NM_191714.1	-	-	2e+0	At4g16442	integral membrane family protein	O.I.	H.G.	S.X.
0.29	31.1	0.98	Os02g0640600	9630.m04103	-	-	2e+0	At5g54070	AT-HSFA9	O.I.	H.G.	S.X.
0.29	31.1	0.98	Os01g0957400	NM_189328.1	-	-	2e+0	At3g52520	unknown protein	O.I.	H.G.	S.X.
0.29	31.1	0.98	Os10g0352200	AK111071.1	-	Hypothetical protein	7e-1	At3g49580	LSU1 (RESPONSE TO LOW SULFUR 1)	O.I.	H.G.	S.X.
0.29	31.1	0.98	Os09g0244600	AK108228.1	-	Conserved hypothetical protein	4e-1	At5g61410	RPE	O.I.	H.G.	S.X.
0.29	31.1	0.99	Os01g0108700	AK111316.1	-	Hypothetical protein	5e+0	At4g34555	40S ribosomal protein S25, putative	O.I.	H.G.	S.X.
0.29	31.1	0.99	Os08g0447300	CB674145	-	Protein of unknown function DUF676 domaincontaining protein	3e-2	At4g25770	unknown protein	O.I.	H.G.	S.X.
0.28	31.1	0.99	Os01g0231850	9629.m01281	-	-	3e+0	At5g44980	F-box family protein	O.I.	H.G.	S.X.
0.27	27.5	0.98	Os05g0596900	9633.m04896	-	-	3e+0	At4g10130	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.
0.27	27.5	0.99	Os02g0180900	AK064416.1	-	Hypothetical protein	6e-2	At1g43190	polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putative	O.I.	H.G.	S.X.
0.27	27.5	0.98	Os11g0549400	9639.m03126	-	-	1e+1	At5g55131	-	O.I.	H.G.	S.X.
0.27	27.5	0.98	Os09g0266100	AK102054.1	-	Hypothetical protein	3e+0	At1g61700	DNA-directed RNA polymerase II, putative (RPB10)	O.I.	H.G.	S.X.
0.27	27.5	0.99	Os12g0595300	AK106840.1	-	Cyclin-like F-box domain containing protein	1e+0	At2g35270	DNA-binding protein-related	O.I.	H.G.	S.X.
0.27	27.5	0.99	Os08g0486500	AK111410.1	-	Conserved hypothetical protein	3e+0	At1g18760	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.26	25.6	0.98	Os08g0376700	9636.m02861	-	Response regulator 1	4e+0	At5g54970	unknown protein	O.I.	H.G.	S.X.
0.26	25.6	0.99	Os06g0614901	9634.m03957	-	-	6e-1	At4g01440	nodulin MtN21 family protein	O.I.	H.G.	S.X.
0.26	25.6	0.99	Os08g0505600	9636.m03993	-	-	7e-1	At5g58890	AGL82 (AGAMOUS-LIKE 82)	O.I.	H.G.	S.X.
0.25	24.1	0.99	Os01g0339600	AK106772.1	-	Conserved hypothetical protein	2e-2	At2g21780	unknown protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
25.8 99.5 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
24.4 99.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.8 99.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.9 99.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.9 99.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.8 99.1 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.6 99.1 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.1 99.0 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.6 98.9 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.5 98.9 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
25.8	99.5	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
24.4	99.4	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.8	99.2	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.9	99.1	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.9	99.1	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.8	99.1	GSM377086	Genomic DNA - 45 day old leaf sample - IR64 wtcheck	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.6	99.1	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.1	99.0	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
17.6	98.9	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.5	98.9	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	Os08g0275400
Gene name
Homology with Arabidopsis	Similar to At5g50740: metal ion binding (HF=1e+0)
Module size	6 genes
NF	0.59
%ile	80.5

Co-expression analysis

Gene ID Os08g0275400 Gene name Homology with ArabidopsisSimilar to At5g50740: metal ion binding (HF=1e+0) Module size 6 genes NF 0.59 %ile 80.5

Co-expressed genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os08g0275400

Gene name
Homology with Arabidopsis Similar to At5g50740: metal ion binding (HF=1e+0)

Module size 6 genes

NF 0.59

%ile 80.5

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays