CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os08g0275400

Gene name
Homology with Arabidopsis Similar to At5g50740: metal ion binding (HF=1e+0)

Module size 6 genes

NF 0.59

%ile 80.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 95.8 0.99 Os08g0275400 9636.m01744 - - 1e+0 At5g50740 metal ion binding O.I. H.G. S.X.
0.61 81.2 0.99 Os05g0287100 9633.m01925 - - 9e+0 At5g27541 - O.I. H.G. S.X.
0.57 77.0 0.99 Os04g0265400 9632.m01771 - - 9e+0 At1g32920 unknown protein O.I. H.G. S.X.
0.57 77.0 0.99 Os11g0138225 9639.m00338 - - 1e+1 At5g16980 NADP-dependent oxidoreductase, putative O.I. H.G. S.X.
0.50 68.0 0.99 Os01g0522800 CB627985 - ARM repeat fold domain containing protein 2e+0 At4g10880 unknown protein O.I. H.G. S.X.
0.39 48.3 0.99 Os03g0601400 9631.m03890 - - 5e+0 At5g06470 glutaredoxin family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
25.8 99.5 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
24.4 99.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.8 99.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.9 99.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.9 99.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.8 99.1 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.6 99.1 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.1 99.0 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.6 98.9 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.5 98.9 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the grape gene, 1619284_at, orthologous to the query gene, Os08g0275400

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.78 92.6 1619284_at At5g50740 hypothetical protein LOC100259662 - 5e-6 At2g20790 protein binding O.I. H.G. S.X.
0.67 87.9 1612220_at At5g50740 hypothetical protein LOC100245896 - 3e-14 At5g48640 cyclin family protein O.I. H.G. S.X.
0.67 87.9 1621306_at At5g50740 hypothetical protein LOC100266317 - 2e-25 At2g22120 protein binding / zinc ion binding O.I. H.G. S.X.
0.63 84.3 1611403_at At5g50740 hypothetical protein LOC100241204 - 2e+0 At4g22310 unknown protein O.I. H.G. S.X.
0.50 72.7 1622054_at At5g50740 similar to GTP binding / translation initiation factor - 5e-44 At1g53900 GTP binding / translation initiation factor O.I. H.G. S.X.
0.50 72.7 1608934_at At5g50740 hypothetical protein LOC100265538 - 3e-24 At2g28390 SAND family protein O.I. H.G. S.X.
0.46 66.5 1615993_at At5g50740 hypothetical protein LOC100263412 - 2e-10 At1g80410 EMB2753 (EMBRYO DEFECTIVE 2753) O.I. H.G. S.X.
0.43 61.5 1606528_at At5g50740 hypothetical protein LOC100241598 - 2e-8 At1g07480 transcription factor IIA large subunit / TFIIA large subunit (TFIIA-L) O.I. H.G. S.X.
0.36 50.7 1621810_at At5g50740 hypothetical protein LOC100258904 - 4e+0 At4g33660 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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