CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os08g0275400

Gene name
Homology with Arabidopsis Similar to At5g50740: metal ion binding (HF=1e+0)

Module size 6 genes

NF 0.59

%ile 80.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 95.8 0.99 Os08g0275400 9636.m01744 - - 1e+0 At5g50740 metal ion binding O.I. H.G. S.X.
0.61 81.2 0.99 Os05g0287100 9633.m01925 - - 9e+0 At5g27541 - O.I. H.G. S.X.
0.57 77.0 0.99 Os04g0265400 9632.m01771 - - 9e+0 At1g32920 unknown protein O.I. H.G. S.X.
0.57 77.0 0.99 Os11g0138225 9639.m00338 - - 1e+1 At5g16980 NADP-dependent oxidoreductase, putative O.I. H.G. S.X.
0.50 68.0 0.99 Os01g0522800 CB627985 - ARM repeat fold domain containing protein 2e+0 At4g10880 unknown protein O.I. H.G. S.X.
0.39 48.3 0.99 Os03g0601400 9631.m03890 - - 5e+0 At5g06470 glutaredoxin family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.83	95.8	0.99	Os08g0275400	9636.m01744	-	-	1e+0	At5g50740	metal ion binding	O.I.	H.G.	S.X.
0.61	81.2	0.99	Os05g0287100	9633.m01925	-	-	9e+0	At5g27541	-	O.I.	H.G.	S.X.
0.57	77.0	0.99	Os04g0265400	9632.m01771	-	-	9e+0	At1g32920	unknown protein	O.I.	H.G.	S.X.
0.57	77.0	0.99	Os11g0138225	9639.m00338	-	-	1e+1	At5g16980	NADP-dependent oxidoreductase, putative	O.I.	H.G.	S.X.
0.50	68.0	0.99	Os01g0522800	CB627985	-	ARM repeat fold domain containing protein	2e+0	At4g10880	unknown protein	O.I.	H.G.	S.X.
0.39	48.3	0.99	Os03g0601400	9631.m03890	-	-	5e+0	At5g06470	glutaredoxin family protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
25.8 99.5 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
24.4 99.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.8 99.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.9 99.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.9 99.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.8 99.1 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.6 99.1 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.1 99.0 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.6 98.9 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.5 98.9 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
25.8	99.5	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
24.4	99.4	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.8	99.2	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.9	99.1	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.9	99.1	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.8	99.1	GSM377086	Genomic DNA - 45 day old leaf sample - IR64 wtcheck	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.6	99.1	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.1	99.0	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
17.6	98.9	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.5	98.9	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.214046.1.S1_at, orthologous to the query gene, Os08g0275400

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.54 80.8 PtpAffx.214046.1.S1_at At5g50740 hypothetical protein - 6e-1 At3g49270 unknown protein O.I. H.G. S.X.
0.55 82.2 PtpAffx.212215.1.S1_at At5g50740 hypothetical protein - 7e-8 At2g23840 HNH endonuclease domain-containing protein O.I. H.G. S.X.
0.32 55.2 PtpAffx.224639.1.S1_at At5g50740 hypothetical protein - 6e-1 At3g56510 TBP-binding protein, putative O.I. H.G. S.X.
0.30 52.0 PtpAffx.209940.1.S1_at At5g50740 hypothetical protein - 3e-9 At1g53250 endonuclease O.I. H.G. S.X.
0.28 50.5 PtpAffx.82465.1.A1_at At5g50740 hypothetical protein - 5e-34 At4g01690 PPOX O.I. H.G. S.X.
0.27 47.1 PtpAffx.136067.1.A1_at At5g50740 - - 4e-1 At1g08270 - O.I. H.G. S.X.
0.22 38.3 PtpAffx.210506.1.S1_at At5g50740 hypothetical protein - 1e-43 At1g74470 geranylgeranyl reductase O.I. H.G. S.X.
0.22 38.3 PtpAffx.225683.1.S1_at At5g50740 hypothetical protein - 1e+0 At3g50920 phosphatidic acid phosphatase-related / PAP2-related O.I. H.G. S.X.
0.21 36.5 Ptp.3725.1.S1_at At5g50740 - - 3e-20 At2g02410 unknown protein O.I. H.G. S.X.
0.20 34.6 PtpAffx.13804.1.S1_s_at At5g50740 hypothetical protein - 6e-5 At2g18620 geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative O.I. H.G. S.X.
0.19 32.7 PtpAffx.68858.1.A1_at At5g50740 hypothetical protein - 5e-13 At3g05820 beta-fructofuranosidase/ catalytic O.I. H.G. S.X.
0.19 32.7 PtpAffx.211938.1.S1_s_at At5g50740 hypothetical protein - 4e-12 At4g12710 armadillo/beta-catenin repeat family protein O.I. H.G. S.X.
0.12 19.6 Ptp.796.2.S1_at At5g50740 light-harvesting complex I protein Lhca2 - 1e-25 At3g61470 LHCA2 O.I. H.G. S.X.
0.07 11.6 PtpAffx.160440.1.A1_at At5g50740 - - 2e+0 At2g41340 RPB5D (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, D) O.I. H.G. S.X.
0.07 11.6 PtpAffx.7284.3.A1_at At5g50740 hypothetical protein - 5e-31 At1g62040 ATG8C (autophagy 8c) O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.54	80.8	PtpAffx.214046.1.S1_at	At5g50740	hypothetical protein	-	6e-1	At3g49270	unknown protein	O.I.	H.G.	S.X.
0.55	82.2	PtpAffx.212215.1.S1_at	At5g50740	hypothetical protein	-	7e-8	At2g23840	HNH endonuclease domain-containing protein	O.I.	H.G.	S.X.
0.32	55.2	PtpAffx.224639.1.S1_at	At5g50740	hypothetical protein	-	6e-1	At3g56510	TBP-binding protein, putative	O.I.	H.G.	S.X.
0.30	52.0	PtpAffx.209940.1.S1_at	At5g50740	hypothetical protein	-	3e-9	At1g53250	endonuclease	O.I.	H.G.	S.X.
0.28	50.5	PtpAffx.82465.1.A1_at	At5g50740	hypothetical protein	-	5e-34	At4g01690	PPOX	O.I.	H.G.	S.X.
0.27	47.1	PtpAffx.136067.1.A1_at	At5g50740	-	-	4e-1	At1g08270	-	O.I.	H.G.	S.X.
0.22	38.3	PtpAffx.210506.1.S1_at	At5g50740	hypothetical protein	-	1e-43	At1g74470	geranylgeranyl reductase	O.I.	H.G.	S.X.
0.22	38.3	PtpAffx.225683.1.S1_at	At5g50740	hypothetical protein	-	1e+0	At3g50920	phosphatidic acid phosphatase-related / PAP2-related	O.I.	H.G.	S.X.
0.21	36.5	Ptp.3725.1.S1_at	At5g50740	-	-	3e-20	At2g02410	unknown protein	O.I.	H.G.	S.X.
0.20	34.6	PtpAffx.13804.1.S1_s_at	At5g50740	hypothetical protein	-	6e-5	At2g18620	geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative	O.I.	H.G.	S.X.
0.19	32.7	PtpAffx.68858.1.A1_at	At5g50740	hypothetical protein	-	5e-13	At3g05820	beta-fructofuranosidase/ catalytic	O.I.	H.G.	S.X.
0.19	32.7	PtpAffx.211938.1.S1_s_at	At5g50740	hypothetical protein	-	4e-12	At4g12710	armadillo/beta-catenin repeat family protein	O.I.	H.G.	S.X.
0.12	19.6	Ptp.796.2.S1_at	At5g50740	light-harvesting complex I protein Lhca2	-	1e-25	At3g61470	LHCA2	O.I.	H.G.	S.X.
0.07	11.6	PtpAffx.160440.1.A1_at	At5g50740	-	-	2e+0	At2g41340	RPB5D (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, D)	O.I.	H.G.	S.X.
0.07	11.6	PtpAffx.7284.3.A1_at	At5g50740	hypothetical protein	-	5e-31	At1g62040	ATG8C (autophagy 8c)	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os08g0275400
Gene name
Homology with Arabidopsis	Similar to At5g50740: metal ion binding (HF=1e+0)
Module size	6 genes
NF	0.59
%ile	80.5

Co-expression analysis

Gene ID Os08g0275400 Gene name Homology with ArabidopsisSimilar to At5g50740: metal ion binding (HF=1e+0) Module size 6 genes NF 0.59 %ile 80.5

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os08g0275400

Gene name
Homology with Arabidopsis Similar to At5g50740: metal ion binding (HF=1e+0)

Module size 6 genes

NF 0.59

%ile 80.5

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays