Co-expression analysis

Gene ID Os08g0275400
Gene name
Homology with ArabidopsisSimilar to At5g50740: metal ion binding (HF=1e+0)
Module size 6 genes
NF 0.59
%ile 80.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8395.80.99Os08g02754009636.m01744--1e+0At5g50740metal ion bindingO.I.H.G.S.X.
0.6181.20.99Os05g02871009633.m01925--9e+0At5g27541-O.I.H.G.S.X.
0.5777.00.99Os04g02654009632.m01771--9e+0At1g32920unknown proteinO.I.H.G.S.X.
0.5777.00.99Os11g01382259639.m00338--1e+1At5g16980NADP-dependent oxidoreductase, putativeO.I.H.G.S.X.
0.5068.00.99Os01g0522800CB627985-ARM repeat fold domain containing protein2e+0At4g10880unknown proteinO.I.H.G.S.X.
0.3948.30.99Os03g06014009631.m03890--5e+0At5g06470glutaredoxin family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
25.899.5GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
24.499.4GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
20.899.2GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
19.999.1GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
19.999.1GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
19.899.1GSM377086Genomic DNA - 45 day old leaf sample - IR64 wtcheckGSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
19.699.1GSM377085Genomic DNA - 45 day old leaf sample - mutant f2045GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
19.199.0GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
17.698.9GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
17.598.9GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

A co-expression module including the soybean gene, HgAffx.19654.1.S1_at, orthologous to the query gene, Os08g0275400

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.6HgAffx.19654.1.S1_atAt5g50740--2e+1At5g45350proline-rich family proteinO.I.H.G.S.X.
0.035.8GmaAffx.74485.1.A1_atAt5g50740--7e-2At3g09800protein bindingO.I.H.G.S.X.
0.013.4Gma.9379.1.A1_atAt5g50740--1e+0At1g22885unknown proteinO.I.H.G.S.X.
0.001.4HgAffx.22005.1.S1_atAt5g50740--2e+1At5g36910THI2.2 (THIONIN 2.2)O.I.H.G.S.X.
0.001.4GmaAffx.75038.1.A1_atAt5g50740--3e+0At4g35950ARAC6 (ARABIDOPSIS RAC-LIKE 6)O.I.H.G.S.X.
0.001.4GmaAffx.32240.1.S1_atAt5g50740--2e-1At5g24920AtGDU5 (Arabidopsis thaliana GLUTAMINE DUMPER 5)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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