CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os08g0253800

Gene name
Homology with Arabidopsis Similar to At4g31590: ATCSLC5 (CELLULOSE-SYNTHASE LIKE C5) (HF=7e-14)

Module size 6 genes

NF 0.63

%ile 85.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 82.7 0.87 Os08g0253800 AK108045.1 - Glycosyl transferase, family 2 domain containingprotein 7e-14 At4g31590 ATCSLC5 (CELLULOSE-SYNTHASE LIKE C5) O.I. H.G. S.X.
0.73 91.1 0.89 Os02g0454500 AK064156.1 - Membrane bound O-acyl transferase, MBOAT familyprotein 5e-5 At5g55360 long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein O.I. H.G. S.X.
0.71 89.6 0.89 Os04g0132500 AK121779.1 - Protein kinase domain containing protein 5e-4 At3g24240 leucine-rich repeat transmembrane protein kinase, putative O.I. H.G. S.X.
0.63 82.7 0.87 Os03g0155300 AY046929.1 - Expansin/Lol pI family protein 6e-7 At1g20190 ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11) O.I. H.G. S.X.
0.60 79.7 0.90 Os06g0660200 AK101191.1 - Auxin efflux carrier component 2 (AtPIN2) (Auxinefflux carrier AGR) (Polar-auxin-transport effluxcomponent AGRAVITROPIC 1) (AtAGR1) (Ethylene insensitiveroot 1) (AtEIR1) (WAVY6) 1e-15 At1g70940 PIN3 (PIN-FORMED 3) O.I. H.G. S.X.
0.33 38.8 0.89 Os08g0532700 AK073978.1 - Peroxidase 55 precursor (EC 1.11.1.7) (AtperoxP55) (ATP20a) 4e-5 At5g58400 peroxidase, putative O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
49.3 99.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
30.5 99.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
25.8 99.5 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
21.3 99.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.3 99.2 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.3 99.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.4 99.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.3 98.9 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.7 98.9 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.7 98.8 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.022 1 GO:0006979 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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