CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os08g0238200

Gene name
Homology with Arabidopsis Similar to At3g23570: dienelactone hydrolase family protein (HF=2e+0)

Module size 6 genes

NF 0.16

%ile 13.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 94.6 0.89 Os08g0238200 AK067264.1 - Endo-1,3;1,4-beta-D-glucanase precursor (EC3.2.1.-) 2e+0 At3g23570 dienelactone hydrolase family protein O.I. H.G. S.X.
0.60 79.7 0.89 Os08g0509200 AK067001.1 - Amygdalin hydrolase isoform AH I precursor (EC3.2.1.117) 1e+0 At2g03020 heat shock protein-related O.I. H.G. S.X.
0.50 68.0 0.92 Os01g0872600 AK060248.1 - Hypothetical protein 6e-2 At1g72125 transporter O.I. H.G. S.X.
0.25 24.1 0.90 Os03g0832800 AK062843.1 - Phospholipid/glycerol acyltransferase familyprotein 4e-2 At4g00400 GPAT8 (glycerol-3-phosphate acyltransferase 8) O.I. H.G. S.X.
0.08 4.2 0.89 Os04g0401000 CB652365 - Heavy metal transport/detoxification proteindomain containing protein 8e-2 At5g59040 COPT3 O.I. H.G. S.X.
0.07 3.7 0.87 Os03g0751400 AK069033.1 - 50S ribosomal protein l6 3e-53 At5g20570 RBX1 (RING-BOX 1) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.8 98.1 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5 98.1 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5 97.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.3 97.7 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.3 97.7 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8 97.6 GSM375767 gid1-3_ shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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