Co-expression analysis

Gene ID	Os08g0225000
Gene name
Homology with Arabidopsis	Similar to At2g22230: beta-hydroxyacyl-ACP dehydratase, putative (HF=2e-17)
Module size	6 genes
NF	0.08
%ile	5.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.48	63.7	0.80	Os08g0225000	9636.m01262	-	Beta-hydroxyacyl-ACP dehydratase precursor (Fattyacid synthesis protein)	2e-17	At2g22230	beta-hydroxyacyl-ACP dehydratase, putative	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.46	60.9	0.83	Os03g0818200	AK058641.1	-	Conserved hypothetical protein	5e-14	At5g58490	cinnamoyl-CoA reductase family	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.44	58.1	0.78	Os11g0460700	AK119432.1	-	Protein prenyltransferase domain containingprotein	1e+0	At5g03780	TRFL10 (TRF-LIKE 10)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.38	46.9	0.83	Os04g0672300	AK101246.1	-	Conserved hypothetical protein	5e-1	At5g48290	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.14	9.3	0.79	Os06g0660400	AK111110.1	-	Conserved hypothetical protein	7e-5	At3g26790	FUS3 (FUSCA 3)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	0.5	0.80	Os04g0580400	AK121581.1	-	The start codon is not identified.	4e-1	At3g57870	SCE1 (SUMO CONJUGATION ENZYME 1)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
44.9	99.9	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
19.1	99.0	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
8.9	97.8	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
7.0	97.4	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.3	97.2	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.1	97.1	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.1	97.1	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.1	96.6	GSM278855	KT95-418-non-infected, biological rep3	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
4.9	96.5	GSM377086	Genomic DNA - 45 day old leaf sample - IR64 wtcheck	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.8	96.5	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO

Inter-species module comparison

A co-expression module including the wheat gene, Ta.28307.1.S1_s_at, orthologous to the query gene, Os08g0225000

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.87	94.2	Ta.28307.1.S1_s_at	At2g22230	-	-	1e-20	At2g22230	beta-hydroxyacyl-ACP dehydratase, putative	O.I.	H.G.	S.X.	Please select
0.60	81.0	Ta.6349.1.S1_a_at	At2g22230	-	-	4e-1	At2g24290	unknown protein	O.I.	H.G.	S.X.	Please select
0.58	79.2	Ta.18932.1.A1_x_at	At2g22230	-	-	1e-19	At5g42790	PAF1	O.I.	H.G.	S.X.	Please select
0.53	74.9	Ta.14529.1.S1_x_at	At2g22230	-	-	4e-5	At3g22110	PAC1	O.I.	H.G.	S.X.	Please select
0.51	73.0	Ta.12123.1.S1_at	At2g22230	-	-	7e-32	At5g56280	CSN6A	O.I.	H.G.	S.X.	Please select
0.50	72.4	Ta.14529.1.S1_a_at	At2g22230	-	-	4e-5	At3g22110	PAC1	O.I.	H.G.	S.X.	Please select
0.48	69.0	Ta.18932.2.A1_a_at	At2g22230	-	-	5e+0	At5g47520	AtRABA5a (Arabidopsis Rab GTPase homolog A5a)	O.I.	H.G.	S.X.	Please select
0.48	69.0	Ta.18932.3.S1_at	At2g22230	-	-	2e-4	At1g47250	PAF2	O.I.	H.G.	S.X.	Please select
0.47	67.9	Ta.1742.2.S1_x_at	At2g22230	-	-	2e+0	At4g00270	DNA-binding storekeeper protein-related	O.I.	H.G.	S.X.	Please select
0.46	66.8	Ta.9090.1.S1_at	At2g22230	-	-	2e+0	At2g30410	KIS (KIESEL)	O.I.	H.G.	S.X.	Please select
0.43	62.2	Ta.1039.1.S1_at	At2g22230	-	-	1e-42	At3g15020	malate dehydrogenase (NAD), mitochondrial, putative	O.I.	H.G.	S.X.	Please select
0.41	59.6	Ta.2868.1.S1_at	At2g22230	-	-	3e-12	At5g65270	AtRABA4a (Arabidopsis Rab GTPase homolog A4a)	O.I.	H.G.	S.X.	Please select
0.41	59.6	Ta.14529.3.A1_x_at	At2g22230	-	-	1e+0	At1g29070	ribosomal protein L34 family protein	O.I.	H.G.	S.X.	Please select
0.41	59.6	Ta.6568.1.S1_x_at	At2g22230	-	-	4e-1	At3g05020	ACP1 (acyl carrier protein 1)	O.I.	H.G.	S.X.	Please select
0.38	54.7	Ta.713.1.A1_x_at	At2g22230	-	-	4e-1	At5g18820	EMB3007 (embryo defective 3007)	O.I.	H.G.	S.X.	Please select
0.36	51.9	Ta.28073.1.S1_at	At2g22230	-	-	8e-35	At1g72370	P40	O.I.	H.G.	S.X.	Please select
0.35	49.8	Ta.9543.3.S1_a_at	At2g22230	-	-	4e+0	At3g59500	integral membrane HRF1 family protein	O.I.	H.G.	S.X.	Please select
0.34	48.1	Ta.1531.2.S1_x_at	At2g22230	-	-	3e+0	At5g39230	transcription initiation factor-related	O.I.	H.G.	S.X.	Please select
0.32	44.4	TaAffx.24357.1.S1_at	At2g22230	-	-	1e-20	At5g61240	protein binding	O.I.	H.G.	S.X.	Please select
0.30	40.9	Ta.29627.1.A1_at	At2g22230	-	-	8e-38	At1g22920	CSN5A (COP9 SIGNALOSOME 5A)	O.I.	H.G.	S.X.	Please select
0.27	35.6	Ta.6257.1.S1_at	At2g22230	-	-	5e+0	At5g19140	AILP1	O.I.	H.G.	S.X.	Please select
0.26	33.6	Ta.6568.2.S1_x_at	At2g22230	-	-	8e-2	At3g05020	ACP1 (acyl carrier protein 1)	O.I.	H.G.	S.X.	Please select
0.23	29.0	Ta.9272.1.S1_at	At2g22230	-	-	2e-5	At5g33320	CUE1 (CAB UNDEREXPRESSED 1)	O.I.	H.G.	S.X.	Please select
0.20	24.0	Ta.5773.1.S1_at	At2g22230	-	-	7e-53	At2g33120	SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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