CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os08g0225000

Gene name
Homology with Arabidopsis Similar to At2g22230: beta-hydroxyacyl-ACP dehydratase, putative (HF=2e-17)

Module size 6 genes

NF 0.08

%ile 5.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.48 63.7 0.80 Os08g0225000 9636.m01262 - Beta-hydroxyacyl-ACP dehydratase precursor (Fattyacid synthesis protein) 2e-17 At2g22230 beta-hydroxyacyl-ACP dehydratase, putative O.I. H.G. S.X.
0.46 60.9 0.83 Os03g0818200 AK058641.1 - Conserved hypothetical protein 5e-14 At5g58490 cinnamoyl-CoA reductase family O.I. H.G. S.X.
0.44 58.1 0.78 Os11g0460700 AK119432.1 - Protein prenyltransferase domain containingprotein 1e+0 At5g03780 TRFL10 (TRF-LIKE 10) O.I. H.G. S.X.
0.38 46.9 0.83 Os04g0672300 AK101246.1 - Conserved hypothetical protein 5e-1 At5g48290 heavy-metal-associated domain-containing protein O.I. H.G. S.X.
0.14 9.3 0.79 Os06g0660400 AK111110.1 - Conserved hypothetical protein 7e-5 At3g26790 FUS3 (FUSCA 3) O.I. H.G. S.X.
0.01 0.5 0.80 Os04g0580400 AK121581.1 - The start codon is not identified. 4e-1 At3g57870 SCE1 (SUMO CONJUGATION ENZYME 1) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
44.9 99.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
19.1 99.0 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
8.9 97.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
7.0 97.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.3 97.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.1 97.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.1 97.1 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.1 96.6 GSM278855 KT95-418-non-infected, biological rep3 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
4.9 96.5 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.8 96.5 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.163022.1.S1_s_at, orthologous to the query gene, Os08g0225000

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.54 80.8 PtpAffx.163022.1.S1_s_at At2g22230 hypothetical protein - 2e-43 At5g10160 beta-hydroxyacyl-ACP dehydratase, putative O.I. H.G. S.X.
0.71 92.6 PtpAffx.11317.6.A1_a_at At2g22230 hypothetical protein - 3e-1 At4g03156 small GTPase-related O.I. H.G. S.X.
0.63 88.1 PtpAffx.11317.1.A1_x_at At2g22230 hypothetical protein - 6e-1 At4g03156 small GTPase-related O.I. H.G. S.X.
0.50 78.6 PtpAffx.208744.1.S1_s_at At2g22230 hypothetical protein - 3e-87 At3g22960 PKP-ALPHA O.I. H.G. S.X.
0.47 74.6 PtpAffx.12016.2.S1_at At2g22230 hypothetical protein - 1e-19 At1g24360 3-oxoacyl-(acyl-carrier protein) reductase, chloroplast / 3-ketoacyl-acyl carrier protein reductase O.I. H.G. S.X.
0.44 71.9 PtpAffx.12016.2.S1_a_at At2g22230 hypothetical protein - 1e-19 At1g24360 3-oxoacyl-(acyl-carrier protein) reductase, chloroplast / 3-ketoacyl-acyl carrier protein reductase O.I. H.G. S.X.
0.42 68.6 PtpAffx.23321.1.S1_at At2g22230 - - 6e-23 At4g00026 - O.I. H.G. S.X.
0.42 68.6 PtpAffx.2725.1.A1_at At2g22230 hypothetical protein - 4e-175 At5g52920 PKP-BETA1 (PLASTIDIC PYRUVATE KINASE BETA SUBUNIT 1) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

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