CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os08g0225000

Gene name
Homology with Arabidopsis Similar to At2g22230: beta-hydroxyacyl-ACP dehydratase, putative (HF=2e-17)

Module size 6 genes

NF 0.08

%ile 5.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.48 63.7 0.80 Os08g0225000 9636.m01262 - Beta-hydroxyacyl-ACP dehydratase precursor (Fattyacid synthesis protein) 2e-17 At2g22230 beta-hydroxyacyl-ACP dehydratase, putative O.I. H.G. S.X.
0.46 60.9 0.83 Os03g0818200 AK058641.1 - Conserved hypothetical protein 5e-14 At5g58490 cinnamoyl-CoA reductase family O.I. H.G. S.X.
0.44 58.1 0.78 Os11g0460700 AK119432.1 - Protein prenyltransferase domain containingprotein 1e+0 At5g03780 TRFL10 (TRF-LIKE 10) O.I. H.G. S.X.
0.38 46.9 0.83 Os04g0672300 AK101246.1 - Conserved hypothetical protein 5e-1 At5g48290 heavy-metal-associated domain-containing protein O.I. H.G. S.X.
0.14 9.3 0.79 Os06g0660400 AK111110.1 - Conserved hypothetical protein 7e-5 At3g26790 FUS3 (FUSCA 3) O.I. H.G. S.X.
0.01 0.5 0.80 Os04g0580400 AK121581.1 - The start codon is not identified. 4e-1 At3g57870 SCE1 (SUMO CONJUGATION ENZYME 1) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.48	63.7	0.80	Os08g0225000	9636.m01262	-	Beta-hydroxyacyl-ACP dehydratase precursor (Fattyacid synthesis protein)	2e-17	At2g22230	beta-hydroxyacyl-ACP dehydratase, putative	O.I.	H.G.	S.X.
0.46	60.9	0.83	Os03g0818200	AK058641.1	-	Conserved hypothetical protein	5e-14	At5g58490	cinnamoyl-CoA reductase family	O.I.	H.G.	S.X.
0.44	58.1	0.78	Os11g0460700	AK119432.1	-	Protein prenyltransferase domain containingprotein	1e+0	At5g03780	TRFL10 (TRF-LIKE 10)	O.I.	H.G.	S.X.
0.38	46.9	0.83	Os04g0672300	AK101246.1	-	Conserved hypothetical protein	5e-1	At5g48290	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.
0.14	9.3	0.79	Os06g0660400	AK111110.1	-	Conserved hypothetical protein	7e-5	At3g26790	FUS3 (FUSCA 3)	O.I.	H.G.	S.X.
0.01	0.5	0.80	Os04g0580400	AK121581.1	-	The start codon is not identified.	4e-1	At3g57870	SCE1 (SUMO CONJUGATION ENZYME 1)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
44.9 99.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
19.1 99.0 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
8.9 97.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
7.0 97.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.3 97.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.1 97.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.1 97.1 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.1 96.6 GSM278855 KT95-418-non-infected, biological rep3 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
4.9 96.5 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.8 96.5 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
44.9	99.9	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
19.1	99.0	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
8.9	97.8	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
7.0	97.4	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.3	97.2	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.1	97.1	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.1	97.1	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.1	96.6	GSM278855	KT95-418-non-infected, biological rep3	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
4.9	96.5	GSM377086	Genomic DNA - 45 day old leaf sample - IR64 wtcheck	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.8	96.5	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the soybean gene, Gma.9081.1.S1_at, orthologous to the query gene, Os08g0225000

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.96 99.6 Gma.9081.1.S1_at At2g22230 - - 2e-22 At5g10160 beta-hydroxyacyl-ACP dehydratase, putative O.I. H.G. S.X.
0.58 78.8 GmaAffx.92327.1.S1_s_at At2g22230 - - 2e-42 At3g55280 RPL23AB (RIBOSOMAL PROTEIN L23AB) O.I. H.G. S.X.
0.49 68.3 Gma.12507.1.S1_at At2g22230 - - 2e-22 At2g20060 ribosomal protein L4 family protein O.I. H.G. S.X.
0.46 65.5 Gma.5667.1.S1_a_at At2g22230 - - 1e-15 At1g14980 CPN10 (CHAPERONIN 10) O.I. H.G. S.X.
0.46 65.5 GmaAffx.177.1.S1_s_at At2g22230 - - 6e-40 At2g34480 60S ribosomal protein L18A (RPL18aB) O.I. H.G. S.X.
0.45 63.9 Gma.5741.1.S1_at At2g22230 - - 6e-40 At2g36620 RPL24A (ribosomal protein L24) O.I. H.G. S.X.
0.44 63.3 Gma.7816.1.A1_at At2g22230 - - 7e-24 At2g05990 MOD1 (MOSAIC DEATH 1) O.I. H.G. S.X.
0.43 60.6 Gma.5841.2.S1_s_at At2g22230 - - 1e-22 At1g23290 RPL27AB O.I. H.G. S.X.
0.41 58.1 Gma.17222.1.A1_at At2g22230 - - 2e-20 At3g14600 60S ribosomal protein L18A (RPL18aC) O.I. H.G. S.X.
0.40 57.1 Gma.5864.1.S1_at At2g22230 - - 1e-10 At4g13850 GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2) O.I. H.G. S.X.
0.40 57.1 GmaAffx.89930.1.S1_s_at At2g22230 - - 2e-26 At3g59540 60S ribosomal protein L38 (RPL38B) O.I. H.G. S.X.
0.39 54.5 Gma.6820.1.S1_at At2g22230 - - 1e-13 At1g03860 ATPHB2 (PROHIBITIN 2) O.I. H.G. S.X.
0.36 50.8 Gma.5688.1.S1_at At2g22230 - - 8e-28 At3g57490 40S ribosomal protein S2 (RPS2D) O.I. H.G. S.X.
0.34 47.2 Gma.2834.1.S1_at At2g22230 - - 2e-35 At3g25860 LTA2 O.I. H.G. S.X.
0.34 47.2 Gma.6404.1.S1_at At2g22230 - - 1e-7 At2g32060 40S ribosomal protein S12 (RPS12C) O.I. H.G. S.X.
0.33 46.1 Gma.10930.2.S1_s_at At2g22230 - - 1e-44 At3g02080 40S ribosomal protein S19 (RPS19A) O.I. H.G. S.X.
0.31 42.2 Gma.940.1.A1_s_at At2g22230 - - 1e-30 At1g07830 ribosomal protein L29 family protein O.I. H.G. S.X.
0.31 42.2 GmaAffx.89925.1.S1_x_at At2g22230 40S ribosomal S4 protein - 2e-20 At5g07090 40S ribosomal protein S4 (RPS4B) O.I. H.G. S.X.
0.31 42.2 Gma.6395.1.S1_at At2g22230 - - 1e-65 At4g02930 elongation factor Tu, putative / EF-Tu, putative O.I. H.G. S.X.
0.29 39.0 Gma.3509.1.S1_at At2g22230 dihydrodipicolinate synthase - 3e-37 At2g45440 DHDPS2 (DIHYDRODIPICOLINATE SYNTHASE) O.I. H.G. S.X.
0.29 39.0 Gma.16524.1.S1_at At2g22230 - - 2e-4 At3g56130 biotin/lipoyl attachment domain-containing protein O.I. H.G. S.X.
0.28 39.0 Gma.6507.1.S1_s_at At2g22230 - - 3e-54 At5g09510 40S ribosomal protein S15 (RPS15D) O.I. H.G. S.X.
0.28 39.0 Gma.15892.1.S1_at At2g22230 - - 1e+0 At4g34265 unknown protein O.I. H.G. S.X.
0.27 35.7 Gma.14851.1.S1_at At2g22230 - - 2e-18 At5g10010 unknown protein O.I. H.G. S.X.
0.25 32.6 GmaAffx.230.1.S1_at At2g22230 - - 2e-2 At3g44590 60S acidic ribosomal protein P2 (RPP2D) O.I. H.G. S.X.
0.24 30.9 Gma.1310.1.S1_s_at At2g22230 - - 3e-17 At1g27400 60S ribosomal protein L17 (RPL17A) O.I. H.G. S.X.
0.24 30.9 Gma.5843.2.S1_x_at At2g22230 - - 2e-21 At3g12390 nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative O.I. H.G. S.X.
0.23 29.9 Gma.11033.1.S1_at At2g22230 - - 8e-15 At4g17390 60S ribosomal protein L15 (RPL15B) O.I. H.G. S.X.
0.23 29.9 Gma.17773.1.A1_at At2g22230 peroxisomal voltage-dependent anion-selective channel protein - 1e-10 At5g15090 VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) O.I. H.G. S.X.
0.22 28.1 Gma.3019.1.S1_at At2g22230 - - 4e-19 At3g22230 60S ribosomal protein L27 (RPL27B) O.I. H.G. S.X.
0.22 28.1 Gma.351.1.S1_at At2g22230 - - 3e-2 At2g43110 unknown protein O.I. H.G. S.X.
0.22 28.1 Gma.8045.1.S1_a_at At2g22230 - - 6e-21 At1g07770 RPS15A (ribosomal protein s15a) O.I. H.G. S.X.
0.21 26.6 Gma.1549.1.S1_at At2g22230 - - 1e-156 At1g43170 ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) O.I. H.G. S.X.
0.19 23.7 Gma.6056.1.S1_at At2g22230 - - 2e-4 At1g23100 10 kDa chaperonin, putative O.I. H.G. S.X.
0.18 22.3 Gma.16192.1.S1_at At2g22230 - - 2e-58 At2g47610 60S ribosomal protein L7A (RPL7aA) O.I. H.G. S.X.
0.16 19.7 Gma.10652.1.S1_at At2g22230 - - 1e-13 At5g53560 CB5-E (CYTOCHROME B5 ISOFORM E) O.I. H.G. S.X.
0.15 18.7 Gma.11050.1.S1_a_at At2g22230 - - 3e-8 At3g49910 60S ribosomal protein L26 (RPL26A) O.I. H.G. S.X.
0.13 16.3 GmaAffx.73861.1.S1_at At2g22230 - - 5e-22 At1g58080 ATATP-PRT1 (ATP PHOSPHORIBOSYL TRANSFERASE 1) O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.96	99.6	Gma.9081.1.S1_at	At2g22230	-	-	2e-22	At5g10160	beta-hydroxyacyl-ACP dehydratase, putative	O.I.	H.G.	S.X.
0.58	78.8	GmaAffx.92327.1.S1_s_at	At2g22230	-	-	2e-42	At3g55280	RPL23AB (RIBOSOMAL PROTEIN L23AB)	O.I.	H.G.	S.X.
0.49	68.3	Gma.12507.1.S1_at	At2g22230	-	-	2e-22	At2g20060	ribosomal protein L4 family protein	O.I.	H.G.	S.X.
0.46	65.5	Gma.5667.1.S1_a_at	At2g22230	-	-	1e-15	At1g14980	CPN10 (CHAPERONIN 10)	O.I.	H.G.	S.X.
0.46	65.5	GmaAffx.177.1.S1_s_at	At2g22230	-	-	6e-40	At2g34480	60S ribosomal protein L18A (RPL18aB)	O.I.	H.G.	S.X.
0.45	63.9	Gma.5741.1.S1_at	At2g22230	-	-	6e-40	At2g36620	RPL24A (ribosomal protein L24)	O.I.	H.G.	S.X.
0.44	63.3	Gma.7816.1.A1_at	At2g22230	-	-	7e-24	At2g05990	MOD1 (MOSAIC DEATH 1)	O.I.	H.G.	S.X.
0.43	60.6	Gma.5841.2.S1_s_at	At2g22230	-	-	1e-22	At1g23290	RPL27AB	O.I.	H.G.	S.X.
0.41	58.1	Gma.17222.1.A1_at	At2g22230	-	-	2e-20	At3g14600	60S ribosomal protein L18A (RPL18aC)	O.I.	H.G.	S.X.
0.40	57.1	Gma.5864.1.S1_at	At2g22230	-	-	1e-10	At4g13850	GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)	O.I.	H.G.	S.X.
0.40	57.1	GmaAffx.89930.1.S1_s_at	At2g22230	-	-	2e-26	At3g59540	60S ribosomal protein L38 (RPL38B)	O.I.	H.G.	S.X.
0.39	54.5	Gma.6820.1.S1_at	At2g22230	-	-	1e-13	At1g03860	ATPHB2 (PROHIBITIN 2)	O.I.	H.G.	S.X.
0.36	50.8	Gma.5688.1.S1_at	At2g22230	-	-	8e-28	At3g57490	40S ribosomal protein S2 (RPS2D)	O.I.	H.G.	S.X.
0.34	47.2	Gma.2834.1.S1_at	At2g22230	-	-	2e-35	At3g25860	LTA2	O.I.	H.G.	S.X.
0.34	47.2	Gma.6404.1.S1_at	At2g22230	-	-	1e-7	At2g32060	40S ribosomal protein S12 (RPS12C)	O.I.	H.G.	S.X.
0.33	46.1	Gma.10930.2.S1_s_at	At2g22230	-	-	1e-44	At3g02080	40S ribosomal protein S19 (RPS19A)	O.I.	H.G.	S.X.
0.31	42.2	Gma.940.1.A1_s_at	At2g22230	-	-	1e-30	At1g07830	ribosomal protein L29 family protein	O.I.	H.G.	S.X.
0.31	42.2	GmaAffx.89925.1.S1_x_at	At2g22230	40S ribosomal S4 protein	-	2e-20	At5g07090	40S ribosomal protein S4 (RPS4B)	O.I.	H.G.	S.X.
0.31	42.2	Gma.6395.1.S1_at	At2g22230	-	-	1e-65	At4g02930	elongation factor Tu, putative / EF-Tu, putative	O.I.	H.G.	S.X.
0.29	39.0	Gma.3509.1.S1_at	At2g22230	dihydrodipicolinate synthase	-	3e-37	At2g45440	DHDPS2 (DIHYDRODIPICOLINATE SYNTHASE)	O.I.	H.G.	S.X.
0.29	39.0	Gma.16524.1.S1_at	At2g22230	-	-	2e-4	At3g56130	biotin/lipoyl attachment domain-containing protein	O.I.	H.G.	S.X.
0.28	39.0	Gma.6507.1.S1_s_at	At2g22230	-	-	3e-54	At5g09510	40S ribosomal protein S15 (RPS15D)	O.I.	H.G.	S.X.
0.28	39.0	Gma.15892.1.S1_at	At2g22230	-	-	1e+0	At4g34265	unknown protein	O.I.	H.G.	S.X.
0.27	35.7	Gma.14851.1.S1_at	At2g22230	-	-	2e-18	At5g10010	unknown protein	O.I.	H.G.	S.X.
0.25	32.6	GmaAffx.230.1.S1_at	At2g22230	-	-	2e-2	At3g44590	60S acidic ribosomal protein P2 (RPP2D)	O.I.	H.G.	S.X.
0.24	30.9	Gma.1310.1.S1_s_at	At2g22230	-	-	3e-17	At1g27400	60S ribosomal protein L17 (RPL17A)	O.I.	H.G.	S.X.
0.24	30.9	Gma.5843.2.S1_x_at	At2g22230	-	-	2e-21	At3g12390	nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative	O.I.	H.G.	S.X.
0.23	29.9	Gma.11033.1.S1_at	At2g22230	-	-	8e-15	At4g17390	60S ribosomal protein L15 (RPL15B)	O.I.	H.G.	S.X.
0.23	29.9	Gma.17773.1.A1_at	At2g22230	peroxisomal voltage-dependent anion-selective channel protein	-	1e-10	At5g15090	VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3)	O.I.	H.G.	S.X.
0.22	28.1	Gma.3019.1.S1_at	At2g22230	-	-	4e-19	At3g22230	60S ribosomal protein L27 (RPL27B)	O.I.	H.G.	S.X.
0.22	28.1	Gma.351.1.S1_at	At2g22230	-	-	3e-2	At2g43110	unknown protein	O.I.	H.G.	S.X.
0.22	28.1	Gma.8045.1.S1_a_at	At2g22230	-	-	6e-21	At1g07770	RPS15A (ribosomal protein s15a)	O.I.	H.G.	S.X.
0.21	26.6	Gma.1549.1.S1_at	At2g22230	-	-	1e-156	At1g43170	ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1)	O.I.	H.G.	S.X.
0.19	23.7	Gma.6056.1.S1_at	At2g22230	-	-	2e-4	At1g23100	10 kDa chaperonin, putative	O.I.	H.G.	S.X.
0.18	22.3	Gma.16192.1.S1_at	At2g22230	-	-	2e-58	At2g47610	60S ribosomal protein L7A (RPL7aA)	O.I.	H.G.	S.X.
0.16	19.7	Gma.10652.1.S1_at	At2g22230	-	-	1e-13	At5g53560	CB5-E (CYTOCHROME B5 ISOFORM E)	O.I.	H.G.	S.X.
0.15	18.7	Gma.11050.1.S1_a_at	At2g22230	-	-	3e-8	At3g49910	60S ribosomal protein L26 (RPL26A)	O.I.	H.G.	S.X.
0.13	16.3	GmaAffx.73861.1.S1_at	At2g22230	-	-	5e-22	At1g58080	ATATP-PRT1 (ATP PHOSPHORIBOSYL TRANSFERASE 1)	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os08g0225000
Gene name
Homology with Arabidopsis	Similar to At2g22230: beta-hydroxyacyl-ACP dehydratase, putative (HF=2e-17)
Module size	6 genes
NF	0.08
%ile	5.9

Co-expression analysis

Gene ID Os08g0225000 Gene name Homology with ArabidopsisSimilar to At2g22230: beta-hydroxyacyl-ACP dehydratase, putative (HF=2e-17) Module size 6 genes NF 0.08 %ile 5.9

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os08g0225000

Gene name
Homology with Arabidopsis Similar to At2g22230: beta-hydroxyacyl-ACP dehydratase, putative (HF=2e-17)

Module size 6 genes

NF 0.08

%ile 5.9

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays