CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os08g0214266

Gene name
Homology with Arabidopsis Similar to At5g11680: unknown protein (HF=3e-1)

Module size 35 genes

NF 0.54

%ile 72.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.84 96.0 0.97 Os08g0214266 9636.m01112 - - 3e-1 At5g11680 unknown protein O.I. H.G. S.X.
0.72 89.8 0.99 Os06g0173700 9634.m00702 - - 3e+0 At5g51520 invertase/pectin methylesterase inhibitor family protein O.I. H.G. S.X.
0.70 88.4 0.98 Os08g0206500 9636.m01016 - Transcription factor CBF/NF-Y/archaeal histonedomain containing protein 5e-2 At1g54830 NF-YC3 (NUCLEAR FACTOR Y, SUBUNIT C3) O.I. H.G. S.X.
0.65 83.8 0.98 Os06g0180600 9634.m00760 - - 2e+0 At1g65770 F-box family protein O.I. H.G. S.X.
0.64 83.4 0.98 Os06g0665601 9634.m04419 - - 7e+0 At2g01890 PAP8 (PURPLE ACID PHOSPHATASE 8) O.I. H.G. S.X.
0.63 82.7 0.98 Os05g0293500 AK072592.1 - Probable pectate lyase 18 precursor (EC 4.2.2.2)(Pectate lyase A10) 3e-3 At4g24780 pectate lyase family protein O.I. H.G. S.X.
0.62 81.5 0.97 Os06g0222500 9634.m01164 - - 1e+0 At2g40170 GEA6 (LATE EMBRYOGENESIS ABUNDANT 6) O.I. H.G. S.X.
0.61 81.2 0.98 Os05g0290200 9633.m01960 - - 3e-1 At5g19800 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.59 78.0 0.98 Os01g0586400 9629.m03856 - - 3e+0 At5g44060 unknown protein O.I. H.G. S.X.
0.58 77.0 0.98 Os01g0140800 9629.m00396 - - 7e+0 At5g57300 UbiE/COQ5 methyltransferase family protein O.I. H.G. S.X.
0.58 77.0 0.98 Os03g0354700 9631.m02326 - - 6e+0 At3g60966 protein binding / zinc ion binding O.I. H.G. S.X.
0.57 77.0 0.98 Os07g0179900 9635.m00776 - - 9e-1 At5g02960 40S ribosomal protein S23 (RPS23B) O.I. H.G. S.X.
0.56 76.3 0.98 Os11g0268200 9639.m01527 - - 2e+1 At5g19172 - O.I. H.G. S.X.
0.56 76.3 0.98 Os01g0852300 9629.m06260 - - 3e+0 At2g26520 unknown protein O.I. H.G. S.X.
0.55 73.7 0.98 Os04g0200533 9632.m01111 - - 1e+0 At4g17790 - O.I. H.G. S.X.
0.55 73.7 0.98 Os03g0778300 9631.m05551 - - 3e+0 At3g27025 unknown protein O.I. H.G. S.X.
0.54 71.9 0.98 Os12g0248500 9636.m03391 - - 3e+0 At3g12545 lipid transfer protein-related O.I. H.G. S.X.
0.53 71.3 0.98 Os08g0107700 AK119491.1 - TPR-like domain containing protein 3e+0 At3g26520 TIP2 (TONOPLAST INTRINSIC PROTEIN 2) O.I. H.G. S.X.
0.53 71.3 0.98 Os12g0266500 9640.m01621 - - 4e-2 At3g14670 unknown protein O.I. H.G. S.X.
0.52 69.6 0.98 Os01g0116550 NM_184094.1 - - 4e+0 At2g01505 CLE16 (CLAVATA3/ESR-RELATED 16) O.I. H.G. S.X.
0.52 69.6 0.98 Os01g0659500 NM_192460.1 - - 4e+0 At5g50370 adenylate kinase, putative O.I. H.G. S.X.
0.51 68.7 0.98 Os06g0308550 9634.m01983 - - 2e+0 At1g11850 unknown protein O.I. H.G. S.X.
0.50 68.0 0.98 Os08g0532600 AK119370.1 - Conserved hypothetical protein 1e-4 At5g58400 peroxidase, putative O.I. H.G. S.X.
0.50 68.0 0.98 Os02g0563700 9630.m03385 - - 3e+0 At2g26120 glycine-rich protein O.I. H.G. S.X.
0.50 68.0 0.98 Os03g0374700 9631.m02531 - - 3e-2 At5g55680 glycine-rich protein O.I. H.G. S.X.
0.49 64.4 0.97 Os12g0532000 9640.m03357 - - 7e+0 At4g33960 unknown protein O.I. H.G. S.X.
0.49 64.4 0.99 Os02g0466100 9630.m02522 - - 1e+1 At5g64080 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.
0.47 62.3 0.99 Os01g0626601 9629.m04206 - - 8e-2 At3g44140 unknown protein O.I. H.G. S.X.
0.46 60.9 0.99 Os11g0172900 9639.m00656 - - 1e-1 At4g21230 protein kinase family protein O.I. H.G. S.X.
0.41 52.4 0.98 Os04g0362450 9632.m02769 - - 6e-1 At1g62400 HT1 (high leaf temperature 1) O.I. H.G. S.X.
0.39 48.3 0.98 Os07g0144800 9635.m00451 - - 1e+0 At1g75950 SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) O.I. H.G. S.X.
0.39 48.3 0.98 Os03g0398100 9631.m02773 - - 2e-1 At4g15150 glycine-rich protein O.I. H.G. S.X.
0.36 44.0 0.98 Os06g0494600 9634.m02868 - - 3e+0 At5g59950 RNA and export factor-binding protein, putative O.I. H.G. S.X.
0.35 41.7 0.98 Os10g0444600 AF229169.1 - Phosphate transporter (Fragment) 3e-11 At4g08878 inorganic phosphate transporter, putative O.I. H.G. S.X.
0.24 22.4 0.98 Os01g0794500 NM_190884.1 - Protein translation factor SUI1 homolog (GOS2protein) 8e-1 At4g30300 ATNAP15 O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.84	96.0	0.97	Os08g0214266	9636.m01112	-	-	3e-1	At5g11680	unknown protein	O.I.	H.G.	S.X.
0.72	89.8	0.99	Os06g0173700	9634.m00702	-	-	3e+0	At5g51520	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.
0.70	88.4	0.98	Os08g0206500	9636.m01016	-	Transcription factor CBF/NF-Y/archaeal histonedomain containing protein	5e-2	At1g54830	NF-YC3 (NUCLEAR FACTOR Y, SUBUNIT C3)	O.I.	H.G.	S.X.
0.65	83.8	0.98	Os06g0180600	9634.m00760	-	-	2e+0	At1g65770	F-box family protein	O.I.	H.G.	S.X.
0.64	83.4	0.98	Os06g0665601	9634.m04419	-	-	7e+0	At2g01890	PAP8 (PURPLE ACID PHOSPHATASE 8)	O.I.	H.G.	S.X.
0.63	82.7	0.98	Os05g0293500	AK072592.1	-	Probable pectate lyase 18 precursor (EC 4.2.2.2)(Pectate lyase A10)	3e-3	At4g24780	pectate lyase family protein	O.I.	H.G.	S.X.
0.62	81.5	0.97	Os06g0222500	9634.m01164	-	-	1e+0	At2g40170	GEA6 (LATE EMBRYOGENESIS ABUNDANT 6)	O.I.	H.G.	S.X.
0.61	81.2	0.98	Os05g0290200	9633.m01960	-	-	3e-1	At5g19800	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.
0.59	78.0	0.98	Os01g0586400	9629.m03856	-	-	3e+0	At5g44060	unknown protein	O.I.	H.G.	S.X.
0.58	77.0	0.98	Os01g0140800	9629.m00396	-	-	7e+0	At5g57300	UbiE/COQ5 methyltransferase family protein	O.I.	H.G.	S.X.
0.58	77.0	0.98	Os03g0354700	9631.m02326	-	-	6e+0	At3g60966	protein binding / zinc ion binding	O.I.	H.G.	S.X.
0.57	77.0	0.98	Os07g0179900	9635.m00776	-	-	9e-1	At5g02960	40S ribosomal protein S23 (RPS23B)	O.I.	H.G.	S.X.
0.56	76.3	0.98	Os11g0268200	9639.m01527	-	-	2e+1	At5g19172	-	O.I.	H.G.	S.X.
0.56	76.3	0.98	Os01g0852300	9629.m06260	-	-	3e+0	At2g26520	unknown protein	O.I.	H.G.	S.X.
0.55	73.7	0.98	Os04g0200533	9632.m01111	-	-	1e+0	At4g17790	-	O.I.	H.G.	S.X.
0.55	73.7	0.98	Os03g0778300	9631.m05551	-	-	3e+0	At3g27025	unknown protein	O.I.	H.G.	S.X.
0.54	71.9	0.98	Os12g0248500	9636.m03391	-	-	3e+0	At3g12545	lipid transfer protein-related	O.I.	H.G.	S.X.
0.53	71.3	0.98	Os08g0107700	AK119491.1	-	TPR-like domain containing protein	3e+0	At3g26520	TIP2 (TONOPLAST INTRINSIC PROTEIN 2)	O.I.	H.G.	S.X.
0.53	71.3	0.98	Os12g0266500	9640.m01621	-	-	4e-2	At3g14670	unknown protein	O.I.	H.G.	S.X.
0.52	69.6	0.98	Os01g0116550	NM_184094.1	-	-	4e+0	At2g01505	CLE16 (CLAVATA3/ESR-RELATED 16)	O.I.	H.G.	S.X.
0.52	69.6	0.98	Os01g0659500	NM_192460.1	-	-	4e+0	At5g50370	adenylate kinase, putative	O.I.	H.G.	S.X.
0.51	68.7	0.98	Os06g0308550	9634.m01983	-	-	2e+0	At1g11850	unknown protein	O.I.	H.G.	S.X.
0.50	68.0	0.98	Os08g0532600	AK119370.1	-	Conserved hypothetical protein	1e-4	At5g58400	peroxidase, putative	O.I.	H.G.	S.X.
0.50	68.0	0.98	Os02g0563700	9630.m03385	-	-	3e+0	At2g26120	glycine-rich protein	O.I.	H.G.	S.X.
0.50	68.0	0.98	Os03g0374700	9631.m02531	-	-	3e-2	At5g55680	glycine-rich protein	O.I.	H.G.	S.X.
0.49	64.4	0.97	Os12g0532000	9640.m03357	-	-	7e+0	At4g33960	unknown protein	O.I.	H.G.	S.X.
0.49	64.4	0.99	Os02g0466100	9630.m02522	-	-	1e+1	At5g64080	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.
0.47	62.3	0.99	Os01g0626601	9629.m04206	-	-	8e-2	At3g44140	unknown protein	O.I.	H.G.	S.X.
0.46	60.9	0.99	Os11g0172900	9639.m00656	-	-	1e-1	At4g21230	protein kinase family protein	O.I.	H.G.	S.X.
0.41	52.4	0.98	Os04g0362450	9632.m02769	-	-	6e-1	At1g62400	HT1 (high leaf temperature 1)	O.I.	H.G.	S.X.
0.39	48.3	0.98	Os07g0144800	9635.m00451	-	-	1e+0	At1g75950	SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1)	O.I.	H.G.	S.X.
0.39	48.3	0.98	Os03g0398100	9631.m02773	-	-	2e-1	At4g15150	glycine-rich protein	O.I.	H.G.	S.X.
0.36	44.0	0.98	Os06g0494600	9634.m02868	-	-	3e+0	At5g59950	RNA and export factor-binding protein, putative	O.I.	H.G.	S.X.
0.35	41.7	0.98	Os10g0444600	AF229169.1	-	Phosphate transporter (Fragment)	3e-11	At4g08878	inorganic phosphate transporter, putative	O.I.	H.G.	S.X.
0.24	22.4	0.98	Os01g0794500	NM_190884.1	-	Protein translation factor SUI1 homolog (GOS2protein)	8e-1	At4g30300	ATNAP15	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
29.8 99.7 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.8 99.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.6 98.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.0 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8 98.4 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7 98.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2 98.3 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
29.8	99.7	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
18.8	99.0	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
14.6	98.6	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.0	98.5	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8	98.4	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7	98.4	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4	98.3	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2	98.3	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7	98.2	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6	98.2	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.045 1 GO:0006817 The directed movement of phosphate into, out of, within or between cells.
0.032 1 GO:0006413 The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA.

SF	Genes	GO ID	Process Name	Link to AmiGO
0.045	1	GO:0006817	The directed movement of phosphate into, out of, within or between cells.
0.032	1	GO:0006413	The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	Os08g0214266
Gene name
Homology with Arabidopsis	Similar to At5g11680: unknown protein (HF=3e-1)
Module size	35 genes
NF	0.54
%ile	72.0

Co-expression analysis

Gene ID Os08g0214266 Gene name Homology with ArabidopsisSimilar to At5g11680: unknown protein (HF=3e-1) Module size 35 genes NF 0.54 %ile 72.0

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os08g0214266

Gene name
Homology with Arabidopsis Similar to At5g11680: unknown protein (HF=3e-1)

Module size 35 genes

NF 0.54

%ile 72.0

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays