Co-expression analysis

Gene ID	Os08g0207000
Gene name
Homology with Arabidopsis	Similar to At3g48930: EMB1080 (embryo defective 1080) (HF=4e-60)
Module size	6 genes
NF	0.63
%ile	85.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.9	0.98	Os08g0207000	AK058705.1	-	40S ribosomal protein S11 (S18) (YS12) (RP41)	4e-60	At3g48930	EMB1080 (embryo defective 1080)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.71	89.6	0.98	Os04g0473400	AK067896.1	-	60S ribosomal protein L6	2e-6	At1g74050	60S ribosomal protein L6 (RPL6C)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	0.98	Os03g0341100	AK121580.1	-	60S ribosomal protein L18	2e-12	At5g27850	60S ribosomal protein L18 (RPL18C)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	0.98	Os03g0851000	AK060496.1	-	Transcription factor homolog BTF3-like protein	8e-12	At1g17880	nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	0.98	Os06g0562600	AK067114.1	-	T-complex protein 1, epsilon subunit(TCP-1-epsilon) (CCT-epsilon) (TCP-K36)	2e-88	At1g24510	T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.33	38.8	0.98	Os02g0534800	AK101459.1	-	40S ribosomal protein S14 (Clone MCH2)	3e-67	At3g11510	40S ribosomal protein S14 (RPS14B)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
33.6	99.8	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
18.8	99.0	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
10.2	98.0	GSM195224	Suspension cell	GSE7951	Genome-wide gene expression profiling of rice stigma
9.3	97.9	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.6	97.8	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.7	97.6	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6	97.5	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5	97.5	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.0	97.4	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.0	97.4	GSM359903	FL478 root, control, biological replicate 2	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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