CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os08g0199500

Gene name
Homology with Arabidopsis Similar to At2g32788: - (HF=3e+0)

Module size 7 genes

NF 0.64

%ile 86.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 76.3 0.98 Os08g0199500 9636.m00954 - - 3e+0 At2g32788 - O.I. H.G. S.X.
0.71 89.6 0.98 Os11g0560000 9639.m03201 - Hv1LRR2 1e+0 At1g45231 - O.I. H.G. S.X.
0.71 89.6 0.98 Os04g0523500 9632.m04244 - - 2e-1 At5g41390 - O.I. H.G. S.X.
0.67 87.2 0.98 Os11g0274700 9639.m01600 - Enoyl-CoA hydratase/isomerase domain containingprotein 2e+0 At2g26290 ARSK1 (root-specific kinase 1) O.I. H.G. S.X.
0.67 87.2 0.98 Os08g0165700 9635.m00582 - - 3e+0 At3g09900 ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E) O.I. H.G. S.X.
0.67 87.2 0.98 Os08g0562000 9636.m04569 - - 4e+0 At5g24560 AtPP2-B12 (Phloem protein 2-B12) O.I. H.G. S.X.
0.41 52.4 0.98 Os01g0848000 NM_190602.1 - - 4e+0 At3g02860 zinc ion binding O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
53.3 99.9 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
15.3 98.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.4 98.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.0 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.7 98.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.2 98.4 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.2 98.4 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.9 98.4 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2 98.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.012 1 GO:0006915 A form of programmed cell death that begins when a cell receives internal or external signals that trigger the activity of proteolytic caspases, proceeds through a series of characteristic stages typically including rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), and plasma membrane blebbing (but maintenance of its integrity until the final stages of the process), and ends with the death of the cell.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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