Co-expression analysis

Gene ID Os08g0191900
Gene name
Homology with ArabidopsisSimilar to At3g59040: pentatricopeptide (PPR) repeat-containing protein (HF=3e-16)
Module size 6 genes
NF 0.73
%ile 95.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.90.94Os08g0191900AK067587.1-TPR-like domain containing protein3e-16At3g59040pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.7793.10.95Os03g0108600AK065776.1-DEAD/DEAH box helicase, N-terminal domaincontaining protein2e-5At3g06980DEAD/DEAH box helicase, putativeO.I.H.G.S.X.
0.6787.20.96Os01g0757700CF312018-TPR-like domain containing protein2e-3At4g21190emb1417 (embryo defective 1417)O.I.H.G.S.X.
0.6079.70.95Os04g0610500AK066289.1-Peptidase M24, methionine aminopeptidase familyprotein8e-7At1g13270MAP1C (METHIONINE AMINOPEPTIDASE 1B)O.I.H.G.S.X.
0.5978.00.94Os04g0692200AK071726.1-Conserved hypothetical protein1e-2At3g17160unknown proteinO.I.H.G.S.X.
0.5777.00.94Os03g0824100AK065308.1-TPR-like domain containing protein3e-1At3g56380ARR17 (ARABIDOPSIS RESPONSE REGULATOR 17)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
39.499.9GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
17.298.8GSM195218stigma 1, biological rep1GSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
16.898.8GSM195219stigma 2, biological rep 2GSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
16.098.7GSM195220stigma 3, biological rep 2GSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
6.997.3GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.897.3GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.497.2GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.997.0GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
5.997.0GSM377085Genomic DNA - 45 day old leaf sample - mutant f2045GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.897.0GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1181GO:0006298A system for the correction of errors in which an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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