CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os08g0188300

Gene name
Homology with Arabidopsis Similar to At2g40510: 40S ribosomal protein S26 (RPS26A) (HF=1e+0)

Module size 6 genes

NF 0.69

%ile 91.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.98 Os08g0188300 9636.m00841 - - 1e+0 At2g40510 40S ribosomal protein S26 (RPS26A) O.I. H.G. S.X.
0.67 87.2 0.98 Os01g0848000 NM_190602.1 - - 4e+0 At3g02860 zinc ion binding O.I. H.G. S.X.
0.61 81.2 0.98 Os08g0562000 9636.m04569 - - 4e+0 At5g24560 AtPP2-B12 (Phloem protein 2-B12) O.I. H.G. S.X.
0.60 79.7 0.98 Os04g0523500 9632.m04244 - - 2e-1 At5g41390 - O.I. H.G. S.X.
0.53 71.3 0.98 Os06g0337300 9634.m02266 - - 3e-1 At1g19550 dehydroascorbate reductase, putative O.I. H.G. S.X.
0.50 68.0 0.98 Os04g0425000 9632.m03337 - - 5e+0 At4g18205 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
61.9 99.9 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
23.1 99.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.7 99.1 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.6 99.0 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.5 99.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.1 98.9 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.7 98.9 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.7 98.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.3 98.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.9 98.8 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.111 1 GO:0009405 The set of specific processes that generate the ability of an organism to cause disease in another.
0.063 1 GO:0015992 The directed movement of protons (hydrogen ions) into, out of, within or between cells.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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