CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os08g0167000

Gene name
Homology with Arabidopsis Similar to At1g31770: ABC transporter family protein (HF=2e-8)

Module size 7 genes

NF 0.50

%ile 66.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 76.3 0.88 Os08g0167000 9636.m00636 - ABC transporter related domain containing protein 2e-8 At1g31770 ABC transporter family protein O.I. H.G. S.X.
0.67 87.2 0.89 Os09g0532900 AK106873.1 - Myb, DNA-binding domain containing protein 6e-32 At4g22680 MYB85 (myb domain protein 85) O.I. H.G. S.X.
0.52 69.6 0.88 Os02g0722400 AK070030.1 - Amino acid transporter c (Fragment) 2e-4 At5g23810 AAP7 O.I. H.G. S.X.
0.47 62.3 0.88 Os12g0490000 CA762266 - Mitochodrial transcription terminationfactor-related family protein 5e+0 At4g08170 inositol 1,3,4-trisphosphate 5/6-kinase family protein O.I. H.G. S.X.
0.44 58.1 0.89 Os12g0454800 AY572461.1 - Histidine kinase 7e-3 At5g10530 lectin protein kinase, putative O.I. H.G. S.X.
0.38 46.9 0.88 Os12g0145400 AK063322.1 - Protein of unknown function DUF231 domaincontaining protein 2e-8 At5g19160 unknown protein O.I. H.G. S.X.
0.33 38.8 0.88 Os03g0859900 AK072837.1 - Protein of unknown function DUF547 domaincontaining protein 7e-2 At5g55508 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
25.2 99.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
24.8 99.5 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.4 98.5 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.2 98.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9 98.0 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.041 1 GO:0006865 The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of, within or between cells.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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