CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os08g0165700

Gene name
Homology with Arabidopsis Similar to At3g09900: ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E) (HF=3e+0)

Module size 6 genes

NF 0.61

%ile 82.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.98 Os08g0165700 9635.m00582 - - 3e+0 At3g09900 ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E) O.I. H.G. S.X.
0.80 94.6 0.98 Os08g0562000 9636.m04569 - - 4e+0 At5g24560 AtPP2-B12 (Phloem protein 2-B12) O.I. H.G. S.X.
0.53 71.3 0.98 Os01g0848000 NM_190602.1 - - 4e+0 At3g02860 zinc ion binding O.I. H.G. S.X.
0.53 71.3 0.98 Os07g0514600 9635.m03253 - - 6e-2 At5g39570 unknown protein O.I. H.G. S.X.
0.43 55.4 0.98 Os08g0188300 9636.m00841 - - 1e+0 At2g40510 40S ribosomal protein S26 (RPS26A) O.I. H.G. S.X.
0.38 46.9 0.98 Os08g0199500 9636.m00954 - - 3e+0 At2g32788 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
61.9 99.9 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
28.9 99.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.0 98.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.8 98.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4 98.1 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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