| Gene ID | Os08g0164800 |
| Gene name | |
| Homology with Arabidopsis | Similar to At5g17710: EMB1241 (embryo defective 1241) (HF=2e+0) |
| Module size | 25 genes |
| NF | 0.34 |
| %ile | 37.7 |
| VF | %ile | CC | Gene ID | Repr. ID | Gene name | Func. | Ev | AGI code | Arabidopsis gene name | O.I. | H.G. | S.X. | Other DB |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0.76 | 92.2 | 0.95 | Os08g0164800 | AK120165.1 | - | RNA-directed DNA polymerase (Reversetranscriptase) domain containing protein | 2e+0 | At5g17710 | EMB1241 (embryo defective 1241) | O.I. | H.G. | S.X. | |
| 0.54 | 71.9 | 0.96 | Os04g0219000 | AK071668.1 | - | Conserved hypothetical protein | 2e-1 | At5g02600 | heavy-metal-associated domain-containing protein | O.I. | H.G. | S.X. | |
| 0.51 | 68.7 | 0.97 | Os02g0699800 | AK108578.1 | - | Conserved hypothetical protein | 9e+0 | At5g02920 | ubiquitin-protein ligase | O.I. | H.G. | S.X. | |
| 0.48 | 63.7 | 0.97 | Os08g0208700 | AK068849.1 | - | - | 2e+0 | At5g66410 | PLP3b (Phosducin-like protein 3 homolog) | O.I. | H.G. | S.X. | |
| 0.42 | 53.9 | 0.96 | Os06g0720000 | AK068825.1 | - | Aspartate aminotransferase (EC 2.6.1.1)(Transaminase A) (ASPAT) | 4e-1 | At1g35890 | DNA binding | O.I. | H.G. | S.X. | |
| 0.41 | 52.4 | 0.97 | Os02g0665400 | AK073914.1 | - | Conserved hypothetical protein | 4e-1 | At1g04445 | zinc finger (C2H2 type) family protein | O.I. | H.G. | S.X. | |
| 0.37 | 45.0 | 0.97 | Os11g0101200 | AK064386.1 | - | CCT domain containing protein | 3e-1 | At3g11100 | transcription factor | O.I. | H.G. | S.X. | |
| 0.36 | 44.0 | 0.97 | Os06g0728300 | AK100681.1 | - | Hypothetical protein | 2e-2 | At1g11440 | - | O.I. | H.G. | S.X. | |
| 0.36 | 44.0 | 0.97 | Os03g0753600 | AK071851.1 | - | Conserved hypothetical protein | 2e+0 | At1g47770 | beta-galactosidase | O.I. | H.G. | S.X. | |
| 0.36 | 44.0 | 0.98 | Os10g0518900 | AK070764.1 | - | DNA repair protein rad10 family protein | 2e-1 | At4g01050 | hydroxyproline-rich glycoprotein family protein | O.I. | H.G. | S.X. | |
| 0.35 | 41.7 | 0.97 | Os01g0531200 | NM_193184.1 | - | - | 3e-1 | At1g72080 | unknown protein | O.I. | H.G. | S.X. | |
| 0.33 | 38.8 | 0.98 | Os01g0324200 | CB684860 | - | SWIM Zn-finger domain containing protein | 2e+0 | At1g71200 | DNA binding / transcription factor | O.I. | H.G. | S.X. | |
| 0.32 | 36.3 | 0.98 | Os03g0752200 | CR287940 | - | AtSPO11-1 | 2e-6 | At3g13170 | ATSPO11-1 | O.I. | H.G. | S.X. | |
| 0.31 | 34.5 | 0.97 | Os03g0424600 | AK101882.1 | - | Conserved hypothetical protein | 4e-1 | At3g22820 | allergen-related | O.I. | H.G. | S.X. | |
| 0.30 | 32.7 | 0.98 | Os02g0536400 | AK120158.1 | - | RNA-binding region RNP-1 (RNA recognition motif)domain containing protein | 2e+0 | At3g47295 | unknown protein | O.I. | H.G. | S.X. | |
| 0.30 | 32.7 | 0.96 | Os05g0337500 | CB640460 | - | Conserved hypothetical protein | 3e-1 | At1g63310 | - | O.I. | H.G. | S.X. | |
| 0.30 | 32.7 | 0.97 | Os12g0256900 | AK064488.1 | - | TPR-like domain containing protein | 2e-8 | At4g02750 | pentatricopeptide (PPR) repeat-containing protein | O.I. | H.G. | S.X. | |
| 0.29 | 31.1 | 0.98 | Os10g0484400 | AK107124.1 | - | Ribosomal protein L18P/L5E family protein | 3e-1 | At3g22450 | structural constituent of ribosome | O.I. | H.G. | S.X. | |
| 0.27 | 27.5 | 0.97 | Os12g0142600 | AK067092.1 | - | DTW domain containing protein | 3e-2 | At5g17710 | EMB1241 (embryo defective 1241) | O.I. | H.G. | S.X. | |
| 0.25 | 24.1 | 0.98 | Os01g0922000 | AK073034.1 | - | Hypothetical protein | 1e+0 | At1g65960 | GAD2 (GLUTAMATE DECARBOXYLASE 2) | O.I. | H.G. | S.X. | |
| 0.21 | 17.9 | 0.97 | Os10g0371200 | AK107154.1 | - | Conserved hypothetical protein | 7e-1 | At1g69588 | CLE45 (CLAVATA3/ESR-RELATED 45) | O.I. | H.G. | S.X. | |
| 0.21 | 17.9 | 0.98 | Os10g0142900 | NM_194814.1 | - | Conserved hypothetical protein | 2e-2 | At2g24290 | unknown protein | O.I. | H.G. | S.X. | |
| 0.19 | 15.1 | 0.96 | Os08g0154000 | AK063541.1 | - | O-methyltransferase, family 3 protein | 2e+0 | At3g62000 | O-methyltransferase family 3 protein | O.I. | H.G. | S.X. | |
| 0.19 | 15.1 | 0.98 | Os04g0349300 | 9632.m02658 | - | Conserved hypothetical protein | 2e+0 | At3g28200 | peroxidase, putative | O.I. | H.G. | S.X. | |
| 0.19 | 15.1 | 0.97 | Os11g0557700 | AK107593.1 | - | SAM (and some other nucleotide) binding motifdomain containing protein | 9e-7 | At4g34360 | protease-related | O.I. | H.G. | S.X. |
| Std2 GX | %ile | GSM ID | Assay name | GSE ID | Experiment title | Link to GEO |
|---|---|---|---|---|---|---|
| 15.3 | 98.7 | GSM377075 | Genomic DNA - 45 day old leaf sample - mutant g650 | GSE15071 | Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays | |
| 13.0 | 98.4 | GSM377084 | Genomic DNA - 45 day old leaf sample - mutant f1856 | GSE15071 | Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays | |
| 12.7 | 98.4 | GSM377071 | Genomic DNA - 45 day old leaf sample - mutant d256 | GSE15071 | Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays | |
| 12.7 | 98.4 | GSM377070 | Genomic DNA - 45 day old leaf sample - mutant d1 | GSE15071 | Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays | |
| 12.4 | 98.3 | GSM377073 | Genomic DNA - 45 day old leaf sample - mutant d2943 | GSE15071 | Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays | |
| 11.8 | 98.3 | GSM377076 | Genomic DNA - 45 day old leaf sample - mutant g6485 | GSE15071 | Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays | |
| 11.6 | 98.2 | GSM422674 | Musa_DNA_RICE | GSE16865 | Heterologous microarrays for the study of drought stress in Musa | |
| 11.6 | 98.2 | GSM377072 | Genomic DNA - 45 day old leaf sample - mutant d1137 | GSE15071 | Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays | |
| 11.5 | 98.2 | GSM377081 | Genomic DNA - 45 day old leaf sample - mutant g7534 | GSE15071 | Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays | |
| 11.3 | 98.2 | GSM377077 | Genomic DNA - 45 day old leaf sample - mutant g6489 | GSE15071 | Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays | |
| SF | Genes | GO ID | Process Name | Link to AmiGO |
|---|---|---|---|---|
| 0.053 | 1 | GO:0006265 | The process by which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number. |  |
| 0.049 | 1 | GO:0006259 | The chemical reactions and pathways involving DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides. | |
| 0.032 | 1 | GO:0006281 | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. | |
| Arabidopsis_thaliana |
| Glycine_max |
| Hordeum_vulgare |
| Populus_trichocarpa |
| Triticum_aestivum |
| Vitis_vinifera |
| Zea_mays |
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