Co-expression analysis

Gene ID Os08g0158900
Gene name
Homology with ArabidopsisSimilar to At1g80770: PDE318 (pigment defective 318) (HF=3e-6)
Module size 7 genes
NF 0.48
%ile 62.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6787.20.93Os08g0158900AK067062.1-Nucleolar GTP-binding 1 domain containing protein3e-6At1g80770PDE318 (pigment defective 318)O.I.H.G.S.X.
0.6382.70.93Os12g0533700AK058977.1-Phenylalanyl-tRNA synthetase, class IIc familyprotein2e-11At3g58140phenylalanyl-tRNA synthetase class IIc family proteinO.I.H.G.S.X.
0.5777.00.95Os01g0640800AK065688.1-Conserved hypothetical protein 48 family protein2e-29At1g60230radical SAM domain-containing proteinO.I.H.G.S.X.
0.4051.10.93Os06g0137600AK072214.1-Ribosome-binding factor A family protein8e-3At5g61660glycine-rich proteinO.I.H.G.S.X.
0.4051.10.94Os06g0498900AK065724.1-Conserved hypothetical protein8e-5At3g57180GTP bindingO.I.H.G.S.X.
0.3644.00.93Os04g0692500AK101528.1-Conserved hypothetical protein8e-8At2g32230pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.2931.10.94Os02g0321500AK064540.1-Cellular retinaldehyde-binding)/triple function,C-terminal domain containing protein2e-4At5g63060transporterO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.598.3GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.498.3GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.098.3GSM302916endo6D_rep1GSE11966Expression data from rice embryo,endosperm,root,leaf and seedlingLink to GEO
11.898.3GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.298.2GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.998.1GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.498.1GSM377085Genomic DNA - 45 day old leaf sample - mutant f2045GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.298.0GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.098.0GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.098.0GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1671GO:0006364Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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