Co-expression analysis

Gene ID Os08g0156700
Gene name
Homology with ArabidopsisSimilar to At4g00170: vesicle-associated membrane family protein / VAMP family protein (HF=2e+0)
Module size 7 genes
NF 0.46
%ile 59.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5269.60.97Os08g0156700AK070710.1-VAP272e+0At4g00170vesicle-associated membrane family protein / VAMP family proteinO.I.H.G.S.X.
0.6787.20.97Os01g0600200AU165696-Ser/Thr specific protein phosphatase 2A Bregulatory subunit beta isoform4e-37At1g17720ATB BETAO.I.H.G.S.X.
0.4458.10.98Os03g0214600AK068605.1-26S proteasome subunit-like protein (26Sproteasome subunit RPN9a)4e-18At4g1900626S proteasome regulatory subunit, putative (RPN9)O.I.H.G.S.X.
0.4051.10.97Os03g0825700AK067902.1-Defective in exine formation6e-40At3g09090DEX1 (DEFECTIVE IN EXINE FORMATION 1)O.I.H.G.S.X.
0.3338.80.97Os05g0392300AK062401.1-CDC2+/CDC28-related protein kinase R2 (EC 2.7.1.-)7e-11At1g18040CDKD1O.I.H.G.S.X.
0.3338.80.97Os04g0433900CB683883-Chromodomain helicase-DNA-binding protein Mi-2homolog (dMi-2)2e+0At4g16880disease resistance protein-relatedO.I.H.G.S.X.
0.3134.50.97Os01g0654300AK058593.1--8e-3At1g30825DIS2 (DISTORTED TRICHOMES 2)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.697.3GSM4094319311_young panicle 2cm, biological rep2GSE16265SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChipLink to GEO
6.297.1GSM4094339311_young panicle 2cm, biological rep4GSE16265SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChipLink to GEO
6.097.0GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
5.997.0GSM4094309311_young panicle 2cm, biological rep1GSE16265SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChipLink to GEO
5.196.6GSM4094329311_young panicle 2cm, biological rep3GSE16265SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChipLink to GEO
5.196.6GSM4094349311_young panicle 2cm, biological rep5GSE16265SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChipLink to GEO
4.896.5GSM409428Nipponbare_young panicle 2cm, biological rep4GSE16265SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChipLink to GEO
4.696.3GSM159190Young inflorescence (P1, upto 3 cm), biological rep 2GSE6893Expression data for reproductive development in riceLink to GEO
4.696.3GSM409422Nipponbare_young panicle 2cm, biological rep2GSE16265SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChipLink to GEO
4.296.0GSM159187SAM, biological rep 2GSE6893Expression data for reproductive development in riceLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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