CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os08g0153600

Gene name
Homology with Arabidopsis Similar to At5g40405: - (HF=2e-1)

Module size 6 genes

NF 0.39

%ile 45.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.99 Os08g0153600 9636.m00506 - Protein prenyltransferase domain containingprotein 2e-1 At5g40405 - O.I. H.G. S.X.
0.55 73.7 0.99 Os01g0561500 BI306374 - Conserved hypothetical protein 4e+0 At3g26690 ATNUDX13 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13) O.I. H.G. S.X.
0.50 68.0 0.99 Os03g0603700 BI811773 - Protein prenyltransferase domain containingprotein 4e+0 At5g55840 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.50 68.0 0.99 Os03g0857200 CA767322 - Conserved hypothetical protein 2e+0 At5g55550 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.40 51.1 0.99 Os03g0308900 AK064183.1 - Hypothetical protein 3e+0 At4g17340 TIP2 O.I. H.G. S.X.
0.12 7.2 0.99 Os06g0573800 AK106254.1 - Hypothetical protein 3e+0 At5g07840 ankyrin repeat family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
36.6 99.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.0 98.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4 98.1 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.8 97.8 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.3 97.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.1 97.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8 97.6 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.0 97.4 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.9 97.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.6 97.3 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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