CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os08g0151900

Gene name
Homology with Arabidopsis Similar to At1g16820: vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related (HF=2e+0)

Module size 7 genes

NF 0.45

%ile 57.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.75 91.9 0.95 Os08g0151900 9636.m00489 - - 2e+0 At1g16820 vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related O.I. H.G. S.X.
0.73 91.1 0.96 Os01g0171600 9629.m00699 - - 6e+0 At2g42000 plant EC metallothionein-like family 15 protein O.I. H.G. S.X.
0.50 68.0 0.96 Os10g0172300 9638.m00790 - - 2e+0 At4g30590 plastocyanin-like domain-containing protein O.I. H.G. S.X.
0.33 38.8 0.96 Os08g0514000 9636.m04074 - Legume lectin, beta domain containing protein 3e-1 At4g02420 lectin protein kinase, putative O.I. H.G. S.X.
0.33 38.8 0.96 Os11g0152100 9639.m00460 - - 8e-1 At1g70895 CLE17 (CLAVATA3/ESR-RELATED 17) O.I. H.G. S.X.
0.31 34.5 0.96 Os01g0604100 AK099765.1 - - 9e-2 At5g49840 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding O.I. H.G. S.X.
0.18 13.7 0.96 Os09g0569300 AK069587.1 - Calmodulin-binding heat-shock protein 2e-8 At4g00500 lipase class 3 family protein / calmodulin-binding heat-shock protein-related O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
19.7 99.1 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
19.5 99.1 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.3 99.0 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.0 99.0 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.9 99.0 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.3 98.9 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.0 98.8 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.6 98.8 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.1 98.7 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.7 98.7 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.222 1 GO:0007217 The series of molecular signals generated as a consequence of a tachykinin, i.e. a short peptide with the terminal sequence (Phe-X-Gly-Leu-Met-NH2), binding to a cell surface receptor.
0.222 1 GO:0007268 The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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