CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os08g0151300

Gene name
Homology with Arabidopsis Similar to At1g63910: AtMYB103 (myb domain protein 103) (HF=2e-20)

Module size 6 genes

NF 0.09

%ile 6.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 95.8 0.96 Os08g0151300 AK111808.1 - Myb, DNA-binding domain containing protein 2e-20 At1g63910 AtMYB103 (myb domain protein 103) O.I. H.G. S.X.
0.50 68.0 0.97 Os03g0282100 9631.m01705 - - 3e-1 At3g55090 ATPase, coupled to transmembrane movement of substances O.I. H.G. S.X.
0.17 12.6 0.97 Os05g0415200 AF439787.2 - Phytochelatin synthase 2e-1 At1g03980 ATPCS2 (phytochelatin synthase 2) O.I. H.G. S.X.
0.05 2.5 0.97 Os03g0361500 CF276205 - Terpene synthase, metal-binding domain containingprotein 5e+0 At3g11397 PRA1.A3 (PRENYLATED RAB ACCEPTOR 1.A3) O.I. H.G. S.X.
0.04 2.0 0.97 Os01g0685200 NM_192084.1 - Conserved hypothetical protein 9e-21 At5g38110 ASF1B (ANTI- SILENCING FUNCTION 1B) O.I. H.G. S.X.
0.04 2.0 0.96 Os12g0567000 AK109171.1 - Hypothetical protein 4e-1 At2g41120 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.5 98.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.3 98.3 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.4 98.1 GSM377079 Genomic DNA - 45 day old leaf sample - mutant g6686 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3 98.1 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9 98.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9 98.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the barley gene, Contig9250_s_at, orthologous to the query gene, Os08g0151300

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.92 98.4 Contig9250_s_at At1g63910 - - 3e-19 At4g38620 MYB4 O.I. H.G. S.X.
0.61 78.7 HK04I23r_at At1g63910 - - 8e-1 At3g49115 unknown protein O.I. H.G. S.X.
0.56 74.3 HK03H11r_x_at At1g63910 - - 8e+0 At3g22050 receptor-like protein kinase-related O.I. H.G. S.X.
0.56 74.3 Contig9593_s_at At1g63910 - - 1e-7 At5g48150 PAT1 (phytochrome a signal transduction 1) O.I. H.G. S.X.
0.53 69.7 Contig4418_at At1g63910 - - 3e+0 At5g26100 unknown protein O.I. H.G. S.X.
0.48 63.2 Contig9725_at At1g63910 - - 2e-10 At3g21620 early-responsive to dehydration protein-related / ERD protein-related O.I. H.G. S.X.
0.47 62.2 rbasd16a13_s_at At1g63910 - - 7e-1 At5g61340 unknown protein O.I. H.G. S.X.
0.42 55.2 Contig2673_at At1g63910 - - 1e-17 At4g25820 XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9) O.I. H.G. S.X.
0.23 26.1 Contig8710_at At1g63910 - - 7e+0 At5g37520 unknown protein O.I. H.G. S.X.
0.23 26.1 EBem10_SQ005_L23_x_at At1g63910 - - 7e+0 At5g03850 40S ribosomal protein S28 (RPS28B) O.I. H.G. S.X.
0.20 21.1 Contig11889_at At1g63910 - - 2e+0 At5g15890 unknown protein O.I. H.G. S.X.
0.09 7.4 Contig10894_at At1g63910 - - 5e-13 At3g12710 methyladenine glycosylase family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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