CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os08g0137400

Gene name
Homology with Arabidopsis Similar to At2g20760: protein binding / structural molecule (HF=1e-1)

Module size 8 genes

NF 0.30

%ile 31.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 68.0 0.77 Os08g0137400 AK066535.1 - Plastocyanin-like domain containing protein 1e-1 At2g20760 protein binding / structural molecule O.I. H.G. S.X.
0.50 68.0 0.83 Os12g0561900 AK121202.1 - Conserved hypothetical protein 9e-1 At1g02813 unknown protein O.I. H.G. S.X.
0.40 51.1 0.84 Os12g0458900 AK062722.1 - Hypothetical protein 1e+0 At5g48860 unknown protein O.I. H.G. S.X.
0.38 46.9 0.85 Os01g0320700 AK063226.1 - Hypothetical protein 1e+0 At5g13340 unknown protein O.I. H.G. S.X.
0.31 34.5 0.83 Os05g0163300 AK105598.1 - Beta-Ig-H3/fasciclin domain containing protein 6e-1 At1g29420 - O.I. H.G. S.X.
0.21 17.9 0.85 Os07g0255300 CF325926 - Conserved hypothetical protein 3e+0 At5g60460 sec61beta family protein O.I. H.G. S.X.
0.15 10.3 0.84 Os02g0816300 AK071879.1 - Mast, C-terminal domain containing protein 1e-1 At5g63400 ADK1 (ADENYLATE KINASE 1) O.I. H.G. S.X.
0.13 8.2 0.84 Os08g0491600 9636.m03866 - - 1e+0 At4g13800 permease-related O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.3 99.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.5 99.1 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.3 99.0 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.0 98.9 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.5 98.9 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.1 98.8 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.4 98.8 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.2 98.8 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.6 98.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.4 98.7 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.069 1 GO:0007155 The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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